Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 6.4e-41 170.2 82 100.0
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.9e-29 132.1 79 81.0
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 7.3e-29 130.2 79 78.5
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.3e-28 129.4 79 78.5
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.6e-28 129.0 79 77.2
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 2.1e-28 128.6 79 75.9
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.8e-28 128.3 79 74.7
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.8e-28 128.3 79 75.9
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 4.8e-28 127.5 79 74.7
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 6.2e-28 127.1 79 74.7
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 8.1e-28 126.7 79 73.4
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.1e-27 126.3 79 73.4
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.4e-27 125.9 79 74.7
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.4e-27 125.2 79 74.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 3.1e-27 124.8 79 74.7
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.0e-27 124.4 79 73.4
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 4.0e-27 124.4 79 70.9
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.0e-27 124.4 79 74.7
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 5.3e-27 124.0 79 75.9
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 5.3e-27 124.0 79 72.2
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 9.0e-27 123.2 79 74.7
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-26 122.9 79 74.7
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-26 122.9 79 70.9
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.2e-26 122.9 79 70.9
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.5e-26 122.5 79 72.2
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.5e-26 122.5 79 74.7
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 2.0e-26 122.1 79 73.4
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 2.6e-26 121.7 79 72.2
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 2.6e-26 121.7 78 71.8
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.6e-26 121.7 79 70.9
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 3.4e-26 121.3 79 73.4
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 3.4e-26 121.3 79 73.4
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.4e-26 121.3 79 73.4
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.4e-26 121.3 79 73.4
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 3.4e-26 121.3 79 69.6
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 4.5e-26 120.9 78 73.1
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.8e-26 120.6 79 72.2
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 5.8e-26 120.6 78 71.8
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 7.6e-26 120.2 79 70.9
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.6e-26 120.2 79 69.6
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 9.9e-26 119.8 79 70.9
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 1.3e-25 119.4 79 69.6
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-25 118.2 79 70.9
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-25 118.2 79 70.9
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 3.8e-25 117.9 79 67.1
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.8e-25 117.9 79 70.9
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 4.9e-25 117.5 79 70.9
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 4.9e-25 117.5 79 68.4
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 4.9e-25 117.5 79 68.4
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.9e-25 117.5 79 69.6
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.4e-25 117.1 79 72.2
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 8.4e-25 116.7 79 69.6
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.4e-24 115.9 79 67.1
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.4e-24 115.9 79 69.6
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.4e-24 115.9 79 67.1
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.9e-24 115.5 79 68.4
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-24 115.5 79 69.6
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.4e-24 115.2 79 69.6
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 2.4e-24 115.2 79 68.4
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.4e-24 115.2 79 67.1
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-24 115.2 79 68.4
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 3.2e-24 114.8 79 68.4
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 3.2e-24 114.8 79 67.1
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 3.2e-24 114.8 79 69.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 4.2e-24 114.4 79 68.4
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 5.4e-24 114.0 78 67.9
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.4e-24 114.0 79 68.4
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.4e-24 114.0 79 69.6
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 7.1e-24 113.6 79 63.3
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 7.1e-24 113.6 79 68.4
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.2e-23 112.8 80 70.0
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.2e-23 112.8 79 64.6
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-23 112.8 79 62.0
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 3.5e-23 111.3 79 65.8
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.6e-23 110.9 78 66.7
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 6.0e-23 110.5 79 64.6
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.8e-22 109.0 79 65.8
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 3.9e-22 107.8 71 69.0
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 5.1e-22 107.5 79 63.3
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.9e-21 105.5 74 66.2
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.1e-20 102.1 79 60.8
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 2.8e-20 101.7 78 60.3
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 3.7e-20 101.3 78 61.5
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 4.8e-20 100.9 79 60.8
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.8e-20 100.9 80 58.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 6.2e-20 100.5 79 60.8
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 6.2e-20 100.5 79 60.8
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 8.1e-20 100.1 79 60.8
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 8.1e-20 100.1 79 60.8
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-19 99.0 79 59.5
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.8e-19 99.0 79 59.5
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.8e-19 99.0 78 60.3
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.4e-19 98.6 79 60.8
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 3.1e-19 98.2 78 56.4
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 4.0e-19 97.8 79 59.5
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 4.0e-19 97.8 79 59.5
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 4.0e-19 97.8 79 59.5
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 4.0e-19 97.8 79 59.5
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 4.0e-19 97.8 79 59.5
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 5.3e-19 97.4 79 60.8
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 5.3e-19 97.4 79 59.5
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 5.3e-19 97.4 79 63.3
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 6.9e-19 97.1 79 60.8
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 9.0e-19 96.7 79 58.2
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 9.0e-19 96.7 79 58.2
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 9.0e-19 96.7 79 58.2
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 9.0e-19 96.7 78 59.0
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.2e-18 96.3 79 58.2
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-18 96.3 79 58.2
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-18 96.3 79 58.2
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.2e-18 96.3 78 56.4
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.2e-18 96.3 78 60.3
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.5e-18 95.9 61 68.9
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.5e-18 95.9 78 59.0
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 2.0e-18 95.5 79 57.0
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 2.0e-18 95.5 78 57.7
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.4e-18 94.7 65 70.8
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 4.5e-18 94.4 78 57.7
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.0e-17 93.2 78 57.7
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.3e-17 92.8 63 66.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.7e-17 92.4 78 55.1
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 2.2e-17 92.0 79 59.5
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.2e-17 92.0 72 59.7
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.2e-17 92.0 80 57.5
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.8e-17 91.3 66 60.6
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.1e-16 89.7 80 57.5
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 2.5e-16 88.6 83 51.8
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 2.7e-15 85.1 80 56.2
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.0e-14 83.2 73 54.8
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-13 79.3 56 64.3
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.3e-13 78.2 77 45.5
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 5.7e-13 77.4 55 63.6
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 9.6e-13 76.6 73 50.7
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.7e-12 74.7 56 60.7
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 4.8e-12 74.3 74 51.4
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 8.2e-12 73.6 51 68.6
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 5.3e-11 70.9 49 67.3
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.0e-10 68.9 46 63.0


User provided reference genes

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