Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 0.0e+00 1090.5 554 100.0
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 9.6e-282 973.0 556 90.3
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.6e-268 929.1 557 84.6
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 2.3e-267 925.2 557 84.6
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.3e-262 909.4 556 84.9
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 5.5e-261 904.0 556 84.7
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 9.3e-261 903.3 556 83.8
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 8.8e-259 896.7 557 83.5
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 3.7e-257 891.3 555 81.4
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 4.1e-256 887.9 555 82.0
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.0e-251 873.2 556 82.0
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.8e-249 865.1 559 79.6
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.3e-246 856.3 558 78.3
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.6e-244 849.4 559 78.5
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.0e-243 846.7 557 77.6
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 9.1e-232 807.0 555 76.2
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-231 804.7 552 73.7
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 5.9e-231 804.3 555 74.8
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.0e-230 803.5 560 73.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.7e-230 802.7 561 75.0
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.7e-230 802.7 552 73.7
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 5.0e-230 801.2 559 74.1
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.5e-229 798.9 561 73.3
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 9.4e-229 797.0 556 75.0
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 4.7e-228 794.7 557 73.1
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 1.4e-227 793.1 551 73.7
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.3e-227 792.3 554 75.5
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 8.8e-227 790.4 558 73.8
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.0e-226 789.3 558 74.0
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-226 789.3 552 73.0
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-226 789.3 552 73.0
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.1e-224 783.5 563 73.4
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.1e-224 781.9 564 71.3
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 9.1e-224 780.4 555 72.1
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 2.9e-222 775.4 555 73.2
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 4.2e-221 771.5 558 72.0
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 7.2e-221 770.8 558 72.4
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 3.6e-220 768.5 559 71.9
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 4.7e-220 768.1 556 72.3
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 6.1e-220 767.7 555 71.4
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-218 763.5 569 70.3
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.4e-218 761.9 568 70.6
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.4e-218 761.5 553 74.0
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.7e-217 758.4 554 70.8
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.3e-217 757.3 493 79.1
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.2e-215 753.4 567 69.5
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-215 753.1 567 69.5
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.6e-215 753.1 567 69.5
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.5e-215 751.5 560 71.8
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.0e-214 750.4 557 69.7
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 3.8e-214 748.4 567 69.8
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 6.6e-214 747.7 557 70.4
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-213 746.9 567 68.6
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 3.3e-213 745.3 567 69.0
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 1.2e-212 743.4 568 68.8
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 6.1e-212 741.1 564 69.0
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 8.0e-212 740.7 561 69.3
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 3.0e-211 738.8 560 68.4
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 5.2e-211 738.0 569 69.1
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-210 736.9 565 68.0
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.5e-210 736.5 557 69.5
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 4.4e-210 734.9 559 68.9
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.4e-210 734.9 581 66.6
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.7e-209 733.0 559 68.2
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.9e-209 731.5 551 69.7
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 6.0e-207 724.5 566 66.1
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.3e-206 723.4 561 67.9
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.9e-206 721.8 543 69.1
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 5.0e-206 721.5 558 66.7
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 8.6e-206 720.7 567 66.5
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 5.6e-205 718.0 562 66.5
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 5.6e-205 718.0 556 67.4
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 4.7e-204 714.9 565 65.0
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 6.2e-204 714.5 554 67.1
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.5e-202 709.9 554 67.0
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.5e-202 709.9 508 74.0
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 2.6e-202 709.1 560 67.0
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.3e-201 706.8 554 66.6
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.7e-201 706.4 565 66.2
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 2.2e-201 706.1 555 67.2
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 3.7e-201 705.3 554 66.4
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-200 703.7 554 66.6
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 2.3e-198 696.0 551 65.5
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 2.3e-198 696.0 560 68.0
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 5.1e-198 694.9 560 68.0
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 8.6e-198 694.1 566 64.8
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 2.5e-197 692.6 554 64.3
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 3.6e-196 688.7 569 65.6
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 3.6e-196 688.7 558 68.5
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 4.7e-196 688.3 453 78.6
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 4.7e-196 688.3 555 65.8
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.8e-195 684.5 464 74.1
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 2.0e-194 682.9 552 64.9
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 3.4e-194 682.2 552 64.3
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.2e-193 679.5 564 63.3
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.2e-193 679.5 552 64.9
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-192 677.2 555 65.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.9e-192 676.4 555 66.5
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 3.2e-192 675.6 555 64.1
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.1e-192 675.2 558 66.5
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.2e-191 673.7 556 64.4
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.1e-190 668.3 398 81.7
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 2.5e-189 666.0 559 64.8
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 7.3e-189 664.5 455 71.2
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.8e-188 662.5 550 63.3
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 8.1e-188 661.0 555 62.5
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 3.1e-187 659.1 551 63.3
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 4.0e-187 658.7 555 62.3
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 7.6e-186 654.4 530 64.9
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-185 652.5 552 63.6
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 4.9e-185 651.7 565 59.3
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 7.8e-183 644.4 552 61.2
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 5.6e-173 611.7 587 56.7
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 8.1e-172 607.8 554 59.2
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.8e-171 606.7 564 62.1
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 4.0e-171 605.5 401 74.1
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 9.0e-171 604.4 338 86.1
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 4.5e-170 602.1 557 59.1
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 5.8e-170 601.7 555 61.4
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.0e-166 590.9 384 73.7
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.6e-156 557.0 535 58.3
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.4e-155 553.9 508 56.3
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.2e-152 542.3 303 85.5
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.6e-151 540.4 554 53.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.6e-138 496.5 470 59.8
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.4e-136 490.7 317 84.2
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.0e-130 470.3 455 47.9
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 5.7e-117 425.6 386 62.4
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 7.2e-104 382.1 387 46.0
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.0e-102 378.3 505 47.3
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.0e-97 361.7 197 85.8
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.9e-92 342.8 292 64.0
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.5e-90 336.7 390 50.5
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.6e-90 336.3 358 52.8
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.8e-87 327.0 210 71.9
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-73 282.0 155 84.5
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 6.6e-73 279.3 213 75.6
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 6.9e-62 242.7 199 62.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 2.3e-57 227.6 272 55.5
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.6e-47 194.9 177 66.7
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 3.3e-40 170.6 278 42.4
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 6.9e-38 162.9 91 83.5
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 5.8e-37 159.8 91 82.4
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 4.1e-30 137.1 519 25.4
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.0e-28 132.5 79 81.0
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.7e-26 124.4 69 84.1
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 3.6e-26 124.0 76 78.9
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.8e-25 121.7 115 53.9
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 6.7e-25 119.8 69 81.2
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.4e-21 107.5 152 46.7
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 7.2e-19 99.8 180 31.7
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 3.9e-17 94.0 73 61.6
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.7e-15 88.6 88 55.7
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.2e-15 88.2 51 80.4
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.2e-12 78.2 126 41.3
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 4.4e-08 63.9 50 64.0


User provided reference genes

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