Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31291 Corchorus olitorius HOM05D017380 ORTHO05D019049 2.6e-247 858.2 415 100.0
COL.COLO4_31293 Corchorus olitorius HOM05D001422 ORTHO05D001321 4.7e-140 501.9 439 63.6
COL.COLO4_31368 Corchorus olitorius HOM05D017380 ORTHO05D019049 3.3e-125 452.6 370 63.5
COL.COLO4_09953 Corchorus olitorius HOM05D017380 ORTHO05D019049 9.2e-112 407.9 413 55.2
COL.COLO4_31297 Corchorus olitorius HOM05D017380 ORTHO05D019049 1.1e-56 224.9 258 55.0
COL.COLO4_31298 Corchorus olitorius HOM05D017380 ORTHO05D019049 1.4e-51 208.0 98 99.0
SGA_v2.0_scaffold130G34356 Striga asiatica HOM05D017380 ORTHO05D019049 3.6e-39 166.8 259 38.2
COL.COLO4_05074 Corchorus olitorius HOM05D009781 ORTHO05D011819 7.5e-29 132.5 292 31.8
Dinv25051 Davidia involucrata HOM05D011324 ORTHO05D013448 8.9e-22 109.0 289 29.1
Dinv25052 Davidia involucrata HOM05D011324 ORTHO05D013448 1.7e-20 104.8 246 30.9
COL.COLO4_09257 Corchorus olitorius HOM05D009781 ORTHO05D011819 1.2e-18 98.6 295 27.5
Gohir.D06G025700 Gossypium hirsutum HOM05D009781 ORTHO05D011819 2.3e-17 94.4 314 27.1
Dinv28172 Davidia involucrata HOM05D011324 ORTHO05D013448 3.3e-16 90.5 236 29.7
Dinv28167 Davidia involucrata HOM05D011324 ORTHO05D013448 5.6e-16 89.7 236 30.5
Dinv28165 Davidia involucrata HOM05D011324 ORTHO05D013448 3.6e-15 87.0 238 29.4
Dinv28164 Davidia involucrata HOM05D011324 ORTHO05D013448 4.7e-15 86.7 241 29.5
Gohir.D06G027100 Gossypium hirsutum HOM05D009781 ORTHO05D011819 4.7e-15 86.7 314 26.8
Dinv01717 Davidia involucrata HOM05D011324 ORTHO05D013448 1.8e-14 84.7 238 28.6
Duzib264G0155 Durio zibethinus HOM05D029922 ORTHO05D035097 4.0e-14 83.6 241 29.9
Duzib264G0667 Durio zibethinus HOM05D029922 ORTHO05D035097 4.0e-14 83.6 241 29.9
Dinv25049 Davidia involucrata HOM05D011324 ORTHO05D013448 5.2e-14 83.2 148 37.2
Dinv35658 Davidia involucrata HOM05D013363 ORTHO05D015094 5.2e-14 83.2 288 26.0
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 8.9e-14 82.4 273 27.5
Dinv28170 Davidia involucrata HOM05D011324 ORTHO05D013448 8.9e-14 82.4 197 31.0
Dinv28168 Davidia involucrata HOM05D011324 ORTHO05D013448 1.5e-13 81.6 198 28.8
vmacro07415 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 3.4e-13 80.5 379 25.9
Gohir.A06G044600 Gossypium hirsutum HOM05D009781 ORTHO05D011819 4.4e-13 80.1 236 28.4
Duzib264G0671 Durio zibethinus HOM05D029922 ORTHO05D035097 9.8e-13 79.0 241 29.0
vmacro07414 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 3.7e-12 77.0 376 25.5
CSS0005117 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 4.9e-12 76.6 155 29.7
vmacro07913 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 4.9e-12 76.6 297 26.3
vmacro22790 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 8.3e-12 75.9 384 26.6
vmacro23393 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 8.3e-12 75.9 387 26.6
vmacro23394 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 1.1e-11 75.5 374 24.9
COL.COLO4_22990 Corchorus olitorius HOM05D017380 ORTHO05D019049 1.4e-11 75.1 147 32.0
CSS0001088 Camellia sinensis var. sinensis HOM05D012885 ORTHO05D010877 1.9e-11 74.7 153 35.9
AT4G39590 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 4.1e-11 73.6 159 35.8
CSS0008723 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 4.1e-11 73.6 183 32.8
Dinv34884 Davidia involucrata HOM05D010628 ORTHO05D010877 5.4e-11 73.2 163 31.9
Gohir.A06G037300 Gossypium hirsutum HOM05D009781 ORTHO05D011819 9.2e-11 72.4 241 27.8
PSO541G4415 Papaver somniferum HOM05D000249 ORTHO05D000206 9.2e-11 72.4 256 28.5
Rhsim10G0205100 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.6e-10 71.6 182 31.9
Dinv35477 Davidia involucrata HOM05D013363 ORTHO05D015094 2.7e-10 70.9 276 23.6
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.5e-10 70.5 160 31.9
Aqoxy7G03143 Aquilegia oxysepala HOM05D008418 ORTHO05D011146 4.6e-10 70.1 202 24.8
Migut.H02437 Erythranthe guttata HOM05D000249 ORTHO05D000206 4.6e-10 70.1 295 26.1
Gohir.A06G038600 Gossypium hirsutum HOM05D009781 ORTHO05D011819 4.6e-10 70.1 217 26.7
Rhsim12G0126200 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.6e-10 70.1 155 31.6
AT4G39756 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.3e-09 68.6 204 27.5
AL7G11720 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.3e-09 67.8 102 42.2
COL.COLO4_20526 Corchorus olitorius HOM05D014846 ORTHO05D016249 2.3e-09 67.8 248 26.6
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.3e-09 67.8 100 38.0
Atru.chr12.1168 Acer truncatum HOM05D000249 ORTHO05D000206 3.0e-09 67.4 192 29.2
Thhalv10029197m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 6.6e-09 66.2 171 31.6
COL.COLO4_31615 Corchorus olitorius HOM05D052704 ORTHO05D044704 8.6e-09 65.9 180 26.7
QL11p026821 Quercus lobata HOM05D061260 ORTHO05D009743 1.5e-08 65.1 121 32.2
Aqoxy6G00478 Aquilegia oxysepala HOM05D000249 ORTHO05D000206 1.9e-08 64.7 135 35.6
Dinv35631 Davidia involucrata HOM05D013363 ORTHO05D015094 1.9e-08 64.7 259 25.5
Dinv35834 Davidia involucrata HOM05D013363 ORTHO05D015094 2.5e-08 64.3 133 34.6
QL02p073240 Quercus lobata HOM05D025100 ORTHO05D010877 2.5e-08 64.3 280 23.9
QL11p026859 Quercus lobata HOM05D061260 ORTHO05D009743 2.5e-08 64.3 121 32.2
Carub.0007s0257 Capsella rubella HOM05D000249 ORTHO05D000206 3.3e-08 63.9 186 31.2
Dinv28162 Davidia involucrata HOM05D011324 ORTHO05D013448 4.3e-08 63.5 102 39.2
AL7G11960 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 5.6e-08 63.2 184 28.8
Carub.0003s0535 Capsella rubella HOM05D000249 ORTHO05D014429 5.6e-08 63.2 221 29.4
CARHR139700 Cardamine hirsuta HOM05D000249 ORTHO05D000206 5.6e-08 63.2 100 38.0
QL11p042465 Quercus lobata HOM05D025344 ORTHO05D009743 7.3e-08 62.8 233 26.2
Rhsim03G0269100 Rhododendron simsii HOM05D012919 ORTHO05D013819 7.3e-08 62.8 111 39.6
AL4G22950 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 9.5e-08 62.4 184 29.9
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 1.2e-07 62.0 293 24.9
CSS0020144 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 1.2e-07 62.0 301 24.3
Carub.0007s0144 Capsella rubella HOM05D000249 ORTHO05D000206 1.2e-07 62.0 265 25.3
Rhsim12G0051600 Rhododendron simsii HOM05D010628 ORTHO05D016249 1.2e-07 62.0 251 25.9
CSS0042303 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 1.6e-07 61.6 310 23.9
Sp1g28130 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.6e-07 61.6 266 26.3
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 2.1e-07 61.2 184 31.0
QL11p018809 Quercus lobata HOM05D041046 ORTHO05D021181 2.1e-07 61.2 186 29.6
RhsimUnG0033600 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.1e-07 61.2 177 31.6
BcaC09g51722 Brassica carinata HOM05D000249 ORTHO05D000206 2.8e-07 60.8 263 25.5
CARHR247150 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.8e-07 60.8 201 31.8
Dinv35802 Davidia involucrata HOM05D013363 ORTHO05D015094 2.8e-07 60.8 114 36.8
PSO675G8073 Papaver somniferum HOM05D000249 ORTHO05D000206 2.8e-07 60.8 99 42.4
BolC1t00971H Brassica oleracea HOM05D000249 ORTHO05D000206 3.6e-07 60.5 263 25.5
COL.COLO4_31618 Corchorus olitorius HOM05D044258 ORTHO05D044749 3.6e-07 60.5 232 22.4
QL11p050365 Quercus lobata HOM05D010066 ORTHO05D009743 3.6e-07 60.5 173 30.1
RhsimUnG0033800 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.6e-07 60.5 180 30.0
TAR381G1098 Trochodendron aralioides HOM05D000249 ORTHO05D000206 3.6e-07 60.5 136 33.8
Cfa014784 Carpinus fangiana HOM05D008391 ORTHO05D009743 4.7e-07 60.1 226 25.7
Rhsim07G0232000 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.7e-07 60.1 177 30.5
BcaNung00910 Brassica carinata HOM05D000249 ORTHO05D000206 6.2e-07 59.7 101 44.6
C01p00900 Brassica napus HOM05D000249 ORTHO05D000206 6.2e-07 59.7 101 44.6
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 6.2e-07 59.7 101 44.6
Rhsim05G0014400 Rhododendron simsii HOM05D012885 ORTHO05D010877 8.1e-07 59.3 124 34.7
AL7G13600 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.1e-06 58.9 148 34.5
BolC6t38552H Brassica oleracea HOM05D000249 ORTHO05D000206 1.1e-06 58.9 176 29.5
Lj1g0013672 Lotus japonicus HOM05D000249 ORTHO05D000206 1.1e-06 58.9 257 24.9
Rhsim03G0039300 Rhododendron simsii HOM05D018081 ORTHO05D010877 1.1e-06 58.9 196 26.0
AL6G47530 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.4e-06 58.5 256 25.8
AT5G03020 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.4e-06 58.5 109 34.9
ATR0564G264 Amborella trichopoda HOM05D000249 ORTHO05D000206 1.8e-06 58.2 139 30.9
BcaNung05812 Brassica carinata HOM05D000249 ORTHO05D000206 1.8e-06 58.2 99 39.4
BolC1t00061H Brassica oleracea HOM05D000249 ORTHO05D000206 1.8e-06 58.2 99 39.4
Carub.0008s0881 Capsella rubella HOM05D000249 ORTHO05D000206 1.8e-06 58.2 193 30.1
CiPaw.03G134300 Carya illinoinensis HOM05D000249 ORTHO05D000206 1.8e-06 58.2 196 28.6
C03p37710 Brassica napus HOM05D000249 ORTHO05D000206 2.3e-06 57.8 210 29.0
BolC3t16060H Brassica oleracea HOM05D000249 ORTHO05D000206 2.3e-06 57.8 210 29.0
Thhalv10004132m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.3e-06 57.8 126 38.9
CSS0013471 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 3.1e-06 57.4 232 27.2
QL09p047090 Quercus lobata HOM05D041046 ORTHO05D021181 3.1e-06 57.4 167 26.9
BcaC01g06741 Brassica carinata HOM05D000249 ORTHO05D000206 4.0e-06 57.0 210 29.0
BcaC01g06742 Brassica carinata HOM05D000249 ORTHO05D000206 4.0e-06 57.0 210 29.0
BcaC01g06743 Brassica carinata HOM05D000249 ORTHO05D000206 4.0e-06 57.0 210 29.0
BcaNung05816 Brassica carinata HOM05D000249 ORTHO05D000206 4.0e-06 57.0 101 38.6
C01p00610 Brassica napus HOM05D000249 ORTHO05D000206 4.0e-06 57.0 101 38.6
BolC1t00064H Brassica oleracea HOM05D000249 ORTHO05D000206 4.0e-06 57.0 101 38.6
Thhalv10026900m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 4.0e-06 57.0 191 25.7
QL08p064279 Quercus lobata HOM05D011274 ORTHO05D012136 4.0e-06 57.0 199 26.6
A01p11270 Brassica napus HOM05D000249 ORTHO05D000206 5.2e-06 56.6 147 29.3
CSS0027586 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 5.2e-06 56.6 189 27.0
CSS0032255 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 5.2e-06 56.6 189 27.0
AL7G11590 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 6.8e-06 56.2 102 39.2
BcaC05g25104 Brassica carinata HOM05D000249 ORTHO05D014429 6.8e-06 56.2 190 28.4
Carub.0007s0164 Capsella rubella HOM05D000249 ORTHO05D000206 6.8e-06 56.2 281 25.6
PSO675G5947 Papaver somniferum HOM05D000249 ORTHO05D000206 6.8e-06 56.2 99 40.4
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 6.8e-06 56.2 195 26.7
BcaB01g00661 Brassica carinata HOM05D000249 ORTHO05D000206 8.9e-06 55.8 301 22.9
Carub.0007s0142 Capsella rubella HOM05D000249 ORTHO05D000206 8.9e-06 55.8 102 38.2
Carub.0008s0634 Capsella rubella HOM05D000249 ORTHO05D000206 8.9e-06 55.8 107 40.2
CDE05G2401 Ceratophyllum demersum HOM05D000249 ORTHO05D000206 8.9e-06 55.8 134 29.9
AUR62016279 Chenopodium quinoa HOM05D000249 ORTHO05D000206 8.9e-06 55.8 102 36.3
Potri.007G081100 Populus trichocarpa HOM05D000249 ORTHO05D000206 8.9e-06 55.8 132 33.3


User provided reference genes

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