Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.1e-47 193.0 100 100.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.4e-34 149.4 100 82.0
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.0e-32 143.3 101 76.2
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.1e-32 141.0 101 75.2
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 5.1e-32 141.0 101 75.2
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 6.4e-27 124.0 103 69.9
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.4e-26 122.1 103 69.9
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.2e-25 119.8 103 68.0
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 8.7e-24 113.6 101 65.3
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 3.3e-23 111.7 95 64.2
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.1e-22 109.0 99 57.6
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 2.1e-22 109.0 105 61.0
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.4e-21 105.5 107 60.7
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 4.0e-21 104.8 100 56.0
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 6.9e-21 104.0 91 60.4
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 9.0e-21 103.6 100 58.0
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 2.0e-20 102.4 103 56.3
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 3.4e-20 101.7 105 59.0
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.4e-20 101.7 100 57.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 9.9e-20 100.1 100 55.0
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 1.7e-19 99.4 100 59.0
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.2e-19 99.0 101 55.4
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.2e-19 99.0 101 55.4
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 2.9e-19 98.6 102 54.9
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.9e-19 98.6 101 55.4
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.9e-19 98.6 100 57.0
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.8e-19 98.2 101 55.4
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 4.9e-19 97.8 95 54.7
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 4.9e-19 97.8 99 54.5
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 6.4e-19 97.4 100 54.0
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.4e-19 97.4 101 54.5
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 6.4e-19 97.4 101 54.5
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.4e-18 95.5 97 55.7
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 3.2e-18 95.1 102 60.8
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 3.2e-18 95.1 102 60.8
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 4.2e-18 94.7 101 53.5
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 4.2e-18 94.7 96 58.3
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 7.1e-18 94.0 94 55.3
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 7.1e-18 94.0 101 53.5
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 1.6e-17 92.8 100 53.0
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 2.1e-17 92.4 102 53.9
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 4.6e-17 91.3 100 52.0
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 6.0e-17 90.9 100 52.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 6.0e-17 90.9 94 50.0
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 6.0e-17 90.9 100 52.0
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.0e-16 90.1 101 51.5
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.0e-16 90.1 102 50.0
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 1.8e-16 89.4 64 73.4
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 2.3e-16 89.0 97 56.7
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.9e-16 88.2 60 70.0
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 5.1e-16 87.8 96 52.1
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 5.1e-16 87.8 100 47.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 5.1e-16 87.8 94 50.0
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 6.7e-16 87.4 101 53.5
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 6.7e-16 87.4 93 52.7
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 6.7e-16 87.4 101 54.5
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 8.7e-16 87.0 100 54.0
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.1e-15 86.7 81 53.1
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.5e-15 86.3 102 50.0
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 1.5e-15 86.3 100 48.0
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.9e-15 85.9 101 53.5
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 3.3e-15 85.1 101 53.5
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 4.3e-15 84.7 95 47.4
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 7.4e-15 84.0 98 49.0
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 9.6e-15 83.6 99 48.5
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 9.6e-15 83.6 96 47.9
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.3e-14 83.2 101 47.5
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.3e-14 83.2 98 49.0
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.3e-14 83.2 102 50.0
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.6e-14 82.8 102 47.1
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.6e-14 82.8 100 47.0
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 2.1e-14 82.4 97 47.4
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 2.1e-14 82.4 96 50.0
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 2.1e-14 82.4 105 47.6
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 2.1e-14 82.4 101 52.5
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 2.8e-14 82.0 99 46.5
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 2.8e-14 82.0 99 47.5
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 2.8e-14 82.0 101 52.5
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 4.8e-14 81.3 101 44.6
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 4.8e-14 81.3 98 43.9
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 4.8e-14 81.3 98 43.9
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 4.8e-14 81.3 96 52.1
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 6.2e-14 80.9 102 48.0
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 8.1e-14 80.5 98 45.9
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.1e-13 80.1 101 42.6
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-13 80.1 98 44.9
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-13 80.1 98 44.9
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.1e-13 80.1 98 44.9
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 1.8e-13 79.3 92 51.1
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 4.0e-13 78.2 99 45.5
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 4.0e-13 78.2 99 45.5
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 4.0e-13 78.2 96 45.8
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 4.0e-13 78.2 105 43.8
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 5.3e-13 77.8 99 43.4
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 1.2e-12 76.6 104 43.3
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 1.2e-12 76.6 92 53.3
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.2e-12 76.6 90 48.9
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-12 76.3 100 47.0
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 2.6e-12 75.5 100 48.0
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 2.6e-12 75.5 99 47.5
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 3.4e-12 75.1 61 62.3
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 5.8e-12 74.3 78 55.1
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 7.6e-12 73.9 101 44.6
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 7.6e-12 73.9 99 47.5
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 1.0e-11 73.6 100 45.0
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 1.0e-11 73.6 100 45.0
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 1.0e-11 73.6 100 45.0
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 1.0e-11 73.6 65 53.8
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.3e-11 73.2 99 42.4
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.3e-11 73.2 99 42.4
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.3e-11 73.2 101 44.6
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 2.2e-11 72.4 99 42.4
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 2.2e-11 72.4 99 42.4
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 2.2e-11 72.4 99 42.4
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 2.9e-11 72.0 94 45.7
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 2.9e-11 72.0 82 54.9
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.8e-11 71.6 95 47.4
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 3.8e-11 71.6 101 46.5
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 4.9e-11 71.2 100 44.0
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 1.1e-10 70.1 93 46.2
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 1.9e-10 69.3 95 45.3
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.5e-10 68.9 95 45.3
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 2.5e-10 68.9 53 60.4
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.2e-10 68.6 101 47.5
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 3.2e-10 68.6 94 40.4
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 4.2e-10 68.2 104 44.2
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.2e-10 68.2 90 46.7
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 7.1e-10 67.4 100 47.0
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 9.3e-10 67.0 93 45.2
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 9.3e-10 67.0 100 43.0
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 1.6e-09 66.2 59 59.3
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 2.1e-09 65.9 61 57.4
COL.COLO4_17491 Corchorus olitorius HOM05D008890 ORTHO05D004248 2.1e-09 65.9 100 47.0
Gohir.D01G040300 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.0e-09 64.3 100 46.0
Gorai.002G050000 Gossypium raimondii HOM05D008890 ORTHO05D004248 6.0e-09 64.3 100 46.0
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.0e-08 63.5 61 57.4
Gohir.A01G049800 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.3e-08 63.2 103 46.6
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 1.3e-08 63.2 100 39.0
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.8e-08 62.8 70 47.1
Gohir.D01G040250 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.8e-08 62.8 103 46.6
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 2.3e-08 62.4 81 45.7
AUR62019592 Chenopodium quinoa HOM05D005059 ORTHO05D004248 3.0e-08 62.0 104 40.4
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.9e-08 61.6 101 44.6
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 3.9e-08 61.6 101 44.6
Gorai.002G049900 Gossypium raimondii HOM05D008890 ORTHO05D004248 3.9e-08 61.6 103 46.6
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 6.7e-08 60.8 73 46.6
AUR62037560 Chenopodium quinoa HOM05D005059 ORTHO05D004248 8.7e-08 60.5 104 40.4
Gorai.002G049800 Gossypium raimondii HOM05D008890 ORTHO05D004248 1.1e-07 60.1 103 44.7
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 1.1e-07 60.1 58 53.4
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.5e-07 59.7 100 46.0
Lsat_1_v5_gn_7_102441 Lactuca sativa HOM05D005059 ORTHO05D004248 2.5e-07 58.9 102 43.1
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 3.3e-07 58.5 101 43.6
Lsat_1_v5_gn_7_102321 Lactuca sativa HOM05D005059 ORTHO05D004248 3.3e-07 58.5 100 40.0
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 4.3e-07 58.2 109 40.4
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.7e-07 57.8 103 44.7
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 9.6e-07 57.0 52 55.8
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 9.6e-07 57.0 52 55.8
COL.COLO4_17492 Corchorus olitorius HOM05D008890 ORTHO05D004248 9.6e-07 57.0 96 46.9
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 9.6e-07 57.0 56 51.8
Gohir.A01G049600 Gossypium hirsutum HOM05D008890 ORTHO05D004248 9.6e-07 57.0 104 46.2
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 9.6e-07 57.0 101 42.6
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 1.6e-06 56.2 53 58.5
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 1.6e-06 56.2 53 58.5
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.6e-06 56.2 101 40.6
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 2.1e-06 55.8 53 58.5
Gohir.A01G049500 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.8e-06 55.5 102 43.1
Lsat_1_v5_gn_7_102341 Lactuca sativa HOM05D005059 ORTHO05D004248 2.8e-06 55.5 100 41.0
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 3.7e-06 55.1 52 53.8
Gohir.A01G049700 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.8e-06 54.7 103 43.7
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 6.2e-06 54.3 55 50.9
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 8.2e-06 53.9 55 50.9
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.2e-06 53.9 101 40.6
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 8.2e-06 53.9 101 40.6


User provided reference genes

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