Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 6.7e-27 123.2 61 100.0
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 2.7e-20 101.3 61 80.3
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 3.6e-20 100.9 61 80.3
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 6.1e-20 100.1 61 80.3
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 2.3e-19 98.2 61 78.7
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 3.0e-19 97.8 61 78.7
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 3.9e-19 97.4 61 75.4
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 5.1e-19 97.1 61 82.0
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 8.7e-19 96.3 61 78.7
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 1.1e-18 95.9 61 77.0
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.1e-18 95.9 61 77.0
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.1e-18 95.9 61 77.0
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 1.1e-18 95.9 59 78.0
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 2.5e-18 94.7 61 73.8
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 2.5e-18 94.7 61 78.7
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 4.3e-18 94.0 61 77.0
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 5.7e-18 93.6 61 77.0
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 5.7e-18 93.6 61 75.4
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 9.7e-18 92.8 61 77.0
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 9.7e-18 92.8 61 77.0
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 1.3e-17 92.4 61 73.8
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.3e-17 92.4 61 77.0
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.3e-17 92.4 61 77.0
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 1.3e-17 92.4 61 77.0
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 1.3e-17 92.4 61 75.4
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 1.6e-17 92.0 61 72.1
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 1.6e-17 92.0 61 73.8
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 2.2e-17 91.7 60 73.3
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 2.2e-17 91.7 61 73.8
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 2.8e-17 91.3 61 72.1
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 3.7e-17 90.9 59 74.6
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 3.7e-17 90.9 61 70.5
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 4.8e-17 90.5 61 73.8
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 1.4e-16 89.0 61 70.5
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 1.8e-16 88.6 61 72.1
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 2.4e-16 88.2 61 70.5
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 2.4e-16 88.2 61 72.1
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 6.9e-16 86.7 62 69.4
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 6.9e-16 86.7 61 68.9
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 1.5e-15 85.5 53 73.6
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 2.0e-15 85.1 61 68.9
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 2.6e-15 84.7 61 68.9
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 3.4e-15 84.3 51 76.5
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 4.5e-15 84.0 62 67.7
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 7.7e-15 83.2 61 67.2
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 7.7e-15 83.2 61 68.9
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 7.7e-15 83.2 55 72.7
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 1.3e-14 82.4 61 67.2
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 1.3e-14 82.4 59 69.5
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 1.3e-14 82.4 45 82.2
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 5.0e-14 80.5 61 65.6
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 8.5e-14 79.7 61 65.6
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 2.5e-13 78.2 43 81.4
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 7.2e-13 76.6 61 60.7
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 1.2e-12 75.9 61 62.3
CSS0030855 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.6e-12 75.5 45 77.8
CSS0036908 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.6e-12 75.5 45 77.8
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 2.1e-12 75.1 61 60.7
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 2.7e-12 74.7 61 63.9
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 3.6e-12 74.3 61 59.0
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 3.6e-12 74.3 61 60.7
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 3.6e-12 74.3 61 59.0
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 7.9e-12 73.2 61 60.7
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 1.0e-11 72.8 61 62.3
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 3.0e-11 71.2 61 57.4
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 3.0e-11 71.2 61 57.4
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 3.0e-11 71.2 61 57.4
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 3.0e-11 71.2 61 57.4
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 3.0e-11 71.2 61 57.4
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 3.0e-11 71.2 61 55.7
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 3.0e-11 71.2 61 62.3
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 3.0e-11 71.2 59 61.0
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 1.1e-10 69.3 61 55.7
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 1.1e-10 69.3 55 63.6
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 1.1e-10 69.3 58 56.9
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 2.6e-10 68.2 61 57.4
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 2.6e-10 68.2 61 57.4
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 2.6e-10 68.2 59 61.0
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 3.3e-10 67.8 61 59.0
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 5.7e-10 67.0 61 49.2
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 9.7e-10 66.2 61 57.4
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 9.7e-10 66.2 62 59.7
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 9.7e-10 66.2 52 61.5
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 1.3e-09 65.9 58 56.9
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.7e-09 65.5 61 52.5
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 2.8e-09 64.7 42 66.7
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 1.1e-08 62.8 41 65.9
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 5.9e-07 57.0 61 54.1
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 6.5e-06 53.5 62 54.8


User provided reference genes

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