Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 2.7e-118 428.7 219 100.0
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.8e-106 389.4 225 88.0
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 8.3e-104 380.6 223 85.7
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.1e-102 375.9 223 86.1
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 2.3e-101 372.5 225 84.9
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.5e-100 369.8 223 84.8
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 6.2e-99 364.4 226 84.1
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.4e-95 352.4 226 79.2
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 9.2e-95 350.5 218 78.9
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.3e-93 346.7 217 79.7
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.7e-93 346.3 217 78.3
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.3e-93 345.9 226 78.3
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 3.0e-93 345.5 217 79.7
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.5e-92 343.2 219 77.2
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 4.3e-92 341.7 219 78.5
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 5.6e-92 341.3 248 72.2
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 5.6e-92 341.3 229 77.3
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 7.3e-92 340.9 219 76.7
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 9.6e-92 340.5 219 77.2
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 9.6e-92 340.5 221 77.8
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 1.2e-91 340.1 219 75.8
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.6e-91 339.7 219 75.8
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 2.8e-91 339.0 222 77.5
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 3.6e-91 338.6 216 76.9
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 4.7e-91 338.2 219 77.6
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 6.2e-91 337.8 222 77.0
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 8.1e-91 337.4 222 77.9
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.4e-90 336.7 219 76.7
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.8e-90 336.3 220 75.5
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 3.1e-90 335.5 220 75.5
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 5.2e-90 334.7 220 76.8
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 5.2e-90 334.7 214 78.0
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 6.8e-90 334.3 223 75.3
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.5e-89 333.2 219 76.7
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 2.0e-89 332.8 219 76.3
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 2.0e-89 332.8 219 75.8
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 2.6e-89 332.4 220 74.5
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 2.6e-89 332.4 219 75.8
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 3.4e-89 332.0 219 75.8
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.4e-89 331.6 219 76.3
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 9.9e-89 330.5 206 80.6
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 9.9e-89 330.5 221 76.5
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 1.3e-88 330.1 223 73.5
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 2.2e-88 329.3 219 74.0
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.2e-88 329.3 216 75.9
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.2e-88 329.3 217 74.7
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 2.9e-88 328.9 226 72.6
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 4.9e-88 328.2 216 74.1
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 6.4e-88 327.8 217 72.4
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 8.4e-88 327.4 215 76.3
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 1.1e-87 327.0 217 75.6
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 1.1e-87 327.0 219 74.9
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.4e-87 326.6 218 74.3
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 1.4e-87 326.6 220 73.6
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 1.4e-87 326.6 220 75.0
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.9e-87 326.2 216 74.1
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.2e-87 325.5 219 74.9
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 3.2e-87 325.5 217 73.3
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 4.2e-87 325.1 220 73.6
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 9.3e-87 323.9 220 73.6
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.6e-86 323.2 221 74.2
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.6e-86 323.2 217 73.7
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 1.6e-86 323.2 262 64.9
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 1.6e-86 323.2 219 72.6
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.1e-86 322.8 217 76.5
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 2.1e-86 322.8 216 76.9
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.7e-86 322.4 221 73.3
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 3.5e-86 322.0 221 70.6
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 4.6e-86 321.6 221 74.2
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.3e-85 320.1 227 70.9
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 3.9e-85 318.5 221 69.2
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 8.7e-85 317.4 224 70.1
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 1.9e-84 316.2 220 69.1
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 1.9e-84 316.2 220 69.1
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 2.5e-84 315.8 221 68.8
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 2.5e-84 315.8 221 68.8
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 2.5e-84 315.8 215 73.0
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 2.5e-84 315.8 219 73.5
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 4.3e-84 315.1 218 72.5
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 5.6e-84 314.7 221 67.9
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 7.3e-84 314.3 218 70.6
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.3e-83 313.5 227 70.9
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 3.6e-83 312.0 222 68.0
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 4.8e-83 311.6 221 67.0
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 1.1e-82 310.5 219 71.2
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 3.1e-82 308.9 235 66.0
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 4.0e-82 308.5 234 65.0
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 5.3e-82 308.1 218 68.3
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 9.0e-82 307.4 227 69.2
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.5e-81 306.6 220 69.5
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 2.0e-81 306.2 218 69.3
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.6e-81 305.8 225 69.3
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.6e-81 305.8 220 69.5
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 3.8e-80 302.0 245 66.5
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 4.9e-80 301.6 217 67.7
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 2.4e-79 299.3 211 73.5
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 2.4e-79 299.3 220 68.6
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 7.1e-79 297.7 220 65.5
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 1.2e-78 297.0 260 63.8
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.0e-77 293.9 221 67.4
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.0e-77 293.9 217 66.8
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 3.0e-77 292.4 219 64.4
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 8.7e-77 290.8 220 67.3
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.1e-76 290.4 204 69.6
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.1e-76 290.4 252 61.9
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 2.5e-76 289.3 163 83.4
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 2.5e-76 289.3 222 64.9
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 6.2e-75 284.6 214 69.2
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 4.5e-73 278.5 161 81.4
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 4.5e-73 278.5 207 66.2
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 7.6e-73 277.7 212 69.8
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 3.9e-69 265.4 222 63.5
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 4.3e-68 261.9 181 71.3
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.8e-64 248.8 220 59.5
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.3e-61 240.4 191 67.0
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 4.8e-59 231.9 232 52.2
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 4.1e-58 228.8 132 75.8
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 6.9e-58 228.0 221 55.2
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 9.0e-58 227.6 123 84.6
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.6e-54 216.9 225 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 4.8e-51 205.3 245 46.1
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 6.3e-51 204.9 115 80.9
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 4.5e-49 198.7 207 49.3
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 5.0e-48 195.3 250 45.2
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.4e-41 172.6 171 53.2
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.2e-38 164.1 100 75.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 2.1e-38 163.3 251 37.8
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 2.0e-33 146.7 182 45.6
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 5.2e-29 132.1 251 39.0
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 5.5e-15 85.5 43 90.7
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 2.6e-12 76.6 85 55.3
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.7e-11 73.9 38 89.5
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 4.1e-10 69.3 43 69.8
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 4.5e-09 65.9 38 73.7
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 2.9e-08 63.2 213 25.8
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 9.5e-07 58.2 211 23.7
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 1.6e-06 57.4 37 81.1
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 2.8e-06 56.6 42 73.8
QL10p031514 Quercus lobata HOM05D005618 ORTHO05D337805 2.8e-06 56.6 39 76.9
Ca_24534_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 3.6e-06 56.2 162 24.7
TPR.G6657 Trifolium pratense HOM05D001916 ORTHO05D003272 3.6e-06 56.2 162 25.9
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.7e-06 55.8 28 85.7
Lalb_Chr09g0320811 Lupinus albus HOM05D001916 ORTHO05D003272 6.1e-06 55.5 162 25.3
unitig_0.g2466 Utricularia gibba HOM05D001916 ORTHO05D003272 6.1e-06 55.5 157 27.4
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 8.0e-06 55.1 166 22.9


User provided reference genes

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