Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 3.6e-129 464.9 232 100.0
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 6.1e-105 384.4 230 84.8
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 4.0e-104 381.7 230 83.5
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.8e-99 365.2 230 81.3
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.5e-98 363.2 230 80.9
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.7e-95 351.3 203 86.2
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 5.7e-95 351.3 203 86.2
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 7.3e-90 334.3 217 75.6
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 7.3e-90 334.3 217 75.6
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.6e-89 333.2 200 84.0
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 1.6e-89 333.2 229 72.5
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 8.0e-89 330.9 209 77.5
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 1.0e-88 330.5 226 72.1
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 1.4e-88 330.1 217 74.7
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 2.3e-88 329.3 209 77.0
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 3.0e-88 328.9 219 74.4
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 3.0e-88 328.9 201 78.6
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 5.2e-88 328.2 213 75.1
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 5.2e-88 328.2 222 76.1
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 6.8e-88 327.8 230 67.0
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 8.9e-88 327.4 212 75.5
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 1.5e-87 326.6 196 79.6
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 3.4e-87 325.5 219 74.9
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 4.4e-87 325.1 194 79.9
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 5.7e-87 324.7 194 80.9
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 9.8e-87 323.9 199 78.4
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 1.3e-86 323.6 211 74.4
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 1.7e-86 323.2 200 77.5
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 3.7e-86 322.0 200 77.0
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 4.9e-86 321.6 211 73.9
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 1.1e-85 320.5 200 76.5
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 1.1e-85 320.5 230 69.6
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.4e-85 320.1 211 73.5
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 2.4e-85 319.3 194 78.4
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 2.4e-85 319.3 234 70.1
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 2.4e-85 319.3 230 70.0
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 2.4e-85 319.3 239 67.8
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 7.0e-85 317.8 225 69.8
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.0e-84 316.2 239 66.5
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 2.7e-84 315.8 234 68.8
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 3.5e-84 315.5 231 69.3
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 7.8e-84 314.3 239 66.1
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 1.7e-83 313.2 230 67.8
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.3e-83 312.8 235 66.8
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 3.9e-83 312.0 237 65.4
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 3.9e-83 312.0 229 69.0
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 6.6e-83 311.2 236 66.9
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 8.6e-83 310.8 235 66.4
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.5e-82 310.1 215 74.0
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 1.5e-82 310.1 227 67.4
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 2.5e-82 309.3 230 67.0
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 4.3e-82 308.5 221 69.2
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 4.3e-82 308.5 221 71.0
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 5.6e-82 308.1 185 79.5
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 1.6e-81 306.6 221 71.9
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 2.1e-81 306.2 200 77.5
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 2.8e-81 305.8 228 68.4
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 4.7e-81 305.1 225 67.1
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 1.4e-80 303.5 228 65.8
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.8e-80 303.1 222 69.4
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 1.8e-80 303.1 231 66.7
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 2.6e-79 299.3 210 70.5
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 2.6e-79 299.3 213 72.8
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 9.8e-79 297.4 239 65.3
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 1.3e-78 297.0 228 62.3
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 4.9e-78 295.0 212 67.5
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 6.4e-78 294.7 201 73.6
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 1.1e-77 293.9 201 69.2
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.9e-77 293.1 245 64.5
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 2.4e-77 292.7 228 64.0
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 2.7e-76 289.3 228 61.4
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 2.7e-76 289.3 221 64.7
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 7.8e-76 287.7 222 64.9
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 7.8e-76 287.7 190 76.3
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 7.8e-76 287.7 225 62.7
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 1.0e-75 287.3 225 63.1
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 1.3e-75 287.0 231 63.6
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-74 283.9 221 62.9
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 1.5e-74 283.5 221 65.6
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 1.9e-74 283.1 228 60.1
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 1.9e-74 283.1 223 65.5
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 1.9e-74 283.1 221 65.6
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 2.5e-74 282.7 225 59.1
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 3.3e-74 282.3 261 58.2
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 3.3e-74 282.3 219 63.0
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 5.6e-74 281.6 193 72.0
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 7.3e-74 281.2 232 62.5
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 1.2e-73 280.4 227 63.0
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 1.2e-73 280.4 287 53.7
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.6e-73 280.0 222 62.2
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 4.7e-73 278.5 221 67.0
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 6.2e-73 278.1 232 60.3
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 4.0e-72 275.4 218 62.4
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.2e-71 273.9 252 57.1
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 1.2e-71 273.9 233 60.5
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.2e-71 273.9 220 62.7
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.6e-71 272.7 184 71.7
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 7.5e-71 271.2 235 58.3
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 1.7e-70 270.0 202 64.9
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.1e-69 267.3 222 57.7
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 3.2e-69 265.8 219 62.1
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 7.1e-69 264.6 200 63.0
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 1.0e-67 260.8 204 61.3
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 3.9e-67 258.8 251 58.6
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 6.6e-67 258.1 237 58.2
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 6.6e-67 258.1 194 63.9
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 1.5e-66 256.9 230 53.5
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-66 256.1 240 55.4
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 4.3e-66 255.4 198 61.1
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 7.3e-66 254.6 207 63.8
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 7.3e-66 254.6 190 68.4
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 6.2e-65 251.5 229 53.7
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-64 250.8 188 63.8
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 2.4e-64 249.6 238 54.2
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 1.2e-63 247.3 224 54.5
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 2.6e-63 246.1 210 61.9
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.4e-63 245.7 161 78.9
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.4e-61 238.4 225 53.8
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 1.5e-58 230.3 166 66.3
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 2.5e-58 229.6 163 69.9
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 1.2e-55 220.7 150 71.3
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.3e-54 217.2 171 63.2
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 3.5e-52 209.1 143 72.7
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.3e-50 202.6 116 88.8
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 6.9e-48 194.9 206 54.4
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 8.4e-46 188.0 166 61.4
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 8.7e-43 177.9 112 76.8
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 5.6e-42 175.3 116 74.1
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 7.4e-42 174.9 213 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 3.2e-37 159.5 178 43.8
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 4.3e-34 149.1 208 35.6
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.4e-31 139.4 84 82.1
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 6.5e-30 135.2 96 65.6
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 8.4e-30 134.8 96 66.7
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 1.1e-26 124.4 147 47.6
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 5.7e-26 122.1 148 46.6
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 7.4e-26 121.7 159 39.0
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 7.9e-20 101.7 91 54.9
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 7.9e-20 101.7 122 43.4
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 7.9e-20 101.7 131 42.0
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.3e-18 96.3 69 68.1
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 2.2e-17 93.6 207 29.0
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 2.0e-15 87.0 165 38.8
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 3.4e-15 86.3 71 53.5
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.1e-10 71.2 201 30.8
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 4.8e-09 65.9 44 70.5
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 5.3e-08 62.4 56 53.6
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 5.3e-08 62.4 189 25.4
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 7.7e-07 58.5 48 60.4
Gohir.D06G112500 Gossypium hirsutum HOM05D004903 ORTHO05D036089 2.2e-06 57.0 45 66.7
Gohir.D02G078533 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.5e-06 55.5 30 90.0
Gohir.D04G053733 Gossypium hirsutum HOM05D004903 ORTHO05D036089 6.5e-06 55.5 30 90.0
Gohir.D05G314400 Gossypium hirsutum HOM05D001728 ORTHO05D004321 6.5e-06 55.5 30 90.0
Gohir.D07G051800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 6.5e-06 55.5 30 90.0
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 6.5e-06 55.5 30 90.0
Gorai.012G060300 Gossypium raimondii HOM05D004903 ORTHO05D036089 6.5e-06 55.5 30 90.0


User provided reference genes

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