Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 6.9e-165 583.9 304 100.0
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 9.4e-138 493.8 303 85.1
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 1.5e-135 486.5 303 85.1
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.4e-133 479.9 306 82.0
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 5.3e-133 478.0 306 81.7
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 6.1e-113 411.4 306 72.5
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 4.0e-112 408.7 306 72.9
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 7.5e-111 404.4 304 69.7
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 1.7e-110 403.3 296 72.0
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 3.7e-110 402.1 301 70.1
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 1.4e-109 400.2 303 69.6
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 2.7e-108 396.0 304 66.8
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 1.7e-107 393.3 313 68.7
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.9e-107 392.5 303 68.6
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 3.8e-107 392.1 303 68.6
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 1.5e-106 390.2 305 66.9
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 2.5e-106 389.4 303 66.7
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 7.2e-106 387.9 304 68.4
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.2e-105 387.1 281 68.0
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.1e-105 386.3 282 67.0
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 2.8e-105 386.0 302 67.2
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 3.6e-105 385.6 307 68.1
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 1.8e-104 383.3 296 70.3
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 4.0e-104 382.1 302 66.9
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.2e-103 380.6 301 65.4
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 2.0e-103 379.8 305 66.2
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 2.6e-103 379.4 295 66.8
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 7.5e-103 377.9 299 64.2
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 9.8e-103 377.5 302 65.9
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.7e-102 376.7 264 69.7
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 1.1e-101 374.0 296 63.5
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 2.4e-101 372.9 297 67.3
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 4.1e-101 372.1 307 64.2
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 5.4e-101 371.7 300 65.3
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.2e-100 370.5 305 64.9
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.6e-100 370.2 303 65.0
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 2.7e-100 369.4 301 64.5
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 3.5e-100 369.0 298 65.1
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 4.5e-100 368.6 276 68.5
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 4.5e-100 368.6 299 64.9
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 5.9e-100 368.2 305 63.9
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 1.0e-99 367.5 307 62.9
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 1.7e-99 366.7 354 57.9
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 2.3e-99 366.3 283 66.8
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 5.0e-99 365.2 303 63.7
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 1.9e-98 363.2 250 73.6
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 3.3e-98 362.5 358 57.0
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 5.6e-98 361.7 283 66.8
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 1.6e-97 360.1 246 71.1
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 1.0e-96 357.5 310 60.6
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 1.8e-96 356.7 301 62.1
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 4.0e-96 355.5 281 67.3
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 1.5e-95 353.6 316 59.2
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 2.6e-95 352.8 254 68.9
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 1.7e-94 350.1 264 65.9
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 3.7e-94 349.0 309 62.8
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 4.1e-93 345.5 246 72.0
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 7.0e-93 344.7 307 59.9
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 9.2e-93 344.4 260 65.0
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 2.0e-92 343.2 307 59.3
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 1.0e-91 340.9 291 61.5
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 5.0e-91 338.6 313 59.7
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 4.3e-90 335.5 248 69.4
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 2.8e-89 332.8 306 58.8
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 6.8e-88 328.2 309 56.3
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 8.9e-88 327.8 261 63.6
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 5.8e-87 325.1 298 57.0
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 9.8e-87 324.3 334 53.9
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 1.3e-86 323.9 240 69.2
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 3.7e-86 322.4 263 65.0
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 4.9e-86 322.0 307 56.0
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 4.9e-86 322.0 309 56.3
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 6.4e-86 321.6 309 56.3
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 6.4e-86 321.6 309 56.3
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.4e-85 320.5 310 56.8
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 1.4e-85 320.5 260 63.5
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 4.1e-85 318.9 309 56.3
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.6e-84 317.0 265 62.6
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 3.5e-84 315.8 296 59.5
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 6.0e-84 315.1 331 53.5
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 6.0e-84 315.1 331 53.5
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 1.3e-83 313.9 279 58.8
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 1.7e-83 313.5 305 57.4
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 3.9e-83 312.4 312 56.4
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 1.1e-82 310.8 267 59.9
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 2.3e-80 303.1 298 57.7
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 1.5e-79 300.4 298 57.4
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 9.6e-74 281.2 305 53.4
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 7.6e-71 271.6 196 69.9
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 9.9e-71 271.2 253 58.1
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 2.9e-70 269.6 205 68.8
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 5.1e-67 258.8 216 63.0
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 2.4e-64 250.0 273 49.8
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 4.0e-64 249.2 170 74.7
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 2.9e-62 243.0 314 46.2
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.3e-57 227.6 161 67.7
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 2.8e-57 226.5 190 60.0
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 6.2e-57 225.3 209 60.3
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 1.7e-54 217.2 218 53.7
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 1.6e-52 210.7 172 65.1
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 1.3e-51 207.6 277 41.9
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 2.4e-40 170.2 191 50.3
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 6.1e-36 155.6 134 56.7
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.5e-34 151.0 169 49.7
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 8.2e-17 92.0 219 32.4
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.4e-16 91.3 275 32.0
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.4e-16 90.5 189 33.9
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 5.9e-15 85.9 102 47.1
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 3.6e-12 76.6 207 27.1
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 6.1e-12 75.9 56 66.1
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 6.7e-11 72.4 56 62.5
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 2.7e-07 60.5 266 24.8
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 3.5e-07 60.1 242 25.6
CiPaw.14G115600 Carya illinoinensis HOM05D006655 ORTHO05D007986 5.9e-07 59.3 266 24.8
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 7.7e-07 58.9 242 26.9
C07p58710 Brassica napus HOM05D006655 ORTHO05D007986 1.0e-06 58.5 259 26.3
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 1.0e-06 58.5 266 24.4
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 1.3e-06 58.2 261 25.7
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 1.3e-06 58.2 274 25.9
BcaNung04132 Brassica carinata HOM05D006655 ORTHO05D007986 1.7e-06 57.8 242 25.6
Duzib168G2063 Durio zibethinus HOM05D006655 ORTHO05D007986 1.7e-06 57.8 244 24.6
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 2.2e-06 57.4 269 24.5
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 2.2e-06 57.4 269 24.5
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 2.2e-06 57.4 287 24.7
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 2.9e-06 57.0 53 45.3
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 2.9e-06 57.0 242 26.4
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 3.8e-06 56.6 250 26.4
HanXRQChr01g0023951 Helianthus annuus HOM05D006655 ORTHO05D007986 3.8e-06 56.6 242 24.8
A03p60830 Brassica napus HOM05D006655 ORTHO05D007986 5.0e-06 56.2 240 25.4
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 5.0e-06 56.2 259 25.1
AT4G31530 Arabidopsis thaliana HOM05D006655 ORTHO05D007986 6.5e-06 55.8 258 24.4
Carub.0007s0904 Capsella rubella HOM05D006655 ORTHO05D007986 6.5e-06 55.8 261 24.9
ClCG03G012910 Citrullus lanatus HOM05D006655 ORTHO05D007986 6.5e-06 55.8 242 24.8
Pp3c5_8450 Physcomitrium patens HOM05D006655 ORTHO05D030199 6.5e-06 55.8 225 25.3
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 8.5e-06 55.5 242 25.6


User provided reference genes

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