Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.0e-182 643.3 317 100.0
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.2e-151 540.0 317 81.4
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 3.5e-151 538.5 317 82.3
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.0e-139 498.8 293 80.5
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.0e-138 496.1 293 80.5
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.1e-136 490.3 293 79.2
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.6e-133 478.0 324 72.2
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.6e-130 469.2 318 71.4
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 7.5e-130 467.6 318 71.1
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 3.7e-129 465.3 284 79.6
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.2e-119 433.7 319 63.9
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.3e-118 429.5 318 64.5
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.6e-116 422.2 316 65.5
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.8e-115 419.9 316 64.9
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 9.8e-114 414.1 321 62.9
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.9e-112 409.8 350 58.0
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 9.2e-112 407.5 328 60.1
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.7e-111 406.0 317 63.1
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 4.6e-111 405.2 316 62.3
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.9e-109 399.8 319 61.1
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 1.2e-108 397.1 316 62.0
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.1e-108 394.4 284 65.8
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.1e-107 394.0 315 59.4
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.8e-107 393.3 317 59.6
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.9e-107 391.0 318 61.0
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.2e-106 390.6 321 60.7
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.2e-106 390.6 337 57.9
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 3.4e-106 389.0 379 54.4
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 4.4e-106 388.7 314 61.5
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.7e-105 386.7 318 59.4
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 2.2e-105 386.3 317 60.3
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 4.9e-105 385.2 289 64.0
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 8.4e-105 384.4 316 61.4
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.9e-104 383.3 285 63.9
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.9e-104 383.3 317 60.6
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.4e-104 382.9 297 64.3
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.6e-103 380.2 303 61.4
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 3.5e-103 379.0 313 59.4
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 3.5e-103 379.0 285 62.8
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 6.0e-103 378.3 307 60.6
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 6.0e-103 378.3 326 58.3
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 7.8e-103 377.9 315 59.4
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.3e-102 377.1 313 60.1
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.3e-102 377.1 332 56.9
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.3e-102 377.1 332 56.9
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.3e-102 377.1 287 64.1
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 2.3e-102 376.3 300 59.0
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.9e-102 375.6 319 57.7
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 6.6e-102 374.8 315 58.4
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 8.6e-102 374.4 324 56.8
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.5e-101 373.6 315 58.4
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.5e-101 373.6 265 64.9
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.9e-101 373.2 316 59.2
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 2.5e-101 372.9 229 72.1
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 3.3e-101 372.5 320 57.5
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 4.3e-101 372.1 316 56.6
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 7.3e-101 371.3 316 56.3
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 9.6e-101 370.9 273 63.0
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.2e-100 370.5 318 57.2
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.2e-100 370.5 316 56.3
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.6e-100 370.2 306 59.5
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 2.8e-100 369.4 286 61.2
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 3.6e-100 369.0 279 65.6
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 3.6e-100 369.0 321 57.6
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 4.7e-100 368.6 313 60.4
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.7e-100 368.6 316 57.6
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.7e-100 368.6 316 57.6
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 6.2e-100 368.2 279 62.7
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 6.2e-100 368.2 315 57.5
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.1e-99 367.5 320 57.5
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 3.1e-99 365.9 353 54.1
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 6.9e-99 364.8 272 62.9
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.2e-98 364.0 274 61.7
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.2e-98 364.0 323 57.9
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.5e-98 363.6 270 62.2
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 2.6e-98 362.8 318 56.3
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 7.6e-98 361.3 314 58.0
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.2e-97 359.8 271 62.4
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 4.9e-97 358.6 278 61.5
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 4.9e-97 358.6 248 63.3
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 8.4e-97 357.8 257 65.0
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.1e-96 357.5 283 60.1
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 1.4e-96 357.1 288 60.1
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 2.4e-96 356.3 310 58.1
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 5.4e-96 355.1 380 50.0
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.1e-95 353.2 319 58.0
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 2.7e-95 352.8 248 66.1
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.7e-95 352.8 305 54.1
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 6.0e-95 351.7 342 54.7
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 6.0e-95 351.7 314 54.8
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 7.8e-95 351.3 273 60.4
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.0e-94 350.9 284 58.8
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.3e-94 350.5 249 64.3
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.1e-93 347.4 294 57.5
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 2.5e-93 346.3 300 57.3
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 3.3e-93 345.9 289 58.8
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.8e-92 342.8 302 56.0
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 8.1e-92 341.3 313 56.2
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 1.8e-91 340.1 330 52.7
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.8e-91 340.1 241 64.3
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 3.1e-91 339.3 259 61.4
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 7.6e-90 334.7 280 58.6
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.7e-89 333.6 362 50.6
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.9e-89 332.8 300 55.0
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 3.8e-89 332.4 339 53.4
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 4.9e-89 332.0 249 59.0
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 4.2e-88 328.9 327 54.7
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 5.4e-88 328.6 321 53.3
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 4.8e-84 315.5 213 67.1
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.2e-84 315.1 316 53.2
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.8e-83 313.5 321 48.9
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.0e-82 310.1 316 52.8
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.8e-81 305.8 226 61.5
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 4.2e-80 302.4 321 48.0
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.2e-79 300.8 324 51.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 3.0e-78 296.2 307 47.9
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.6e-76 290.4 248 54.4
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.7e-73 280.4 235 57.0
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 4.9e-73 278.9 230 58.7
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.7e-71 273.1 194 65.5
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 5.1e-70 268.9 264 48.9
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 9.0e-67 258.1 233 53.2
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.5e-66 257.3 210 58.1
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-66 257.3 209 57.9
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.5e-64 250.0 233 49.4
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.5e-64 250.0 233 49.4
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 5.7e-61 238.8 155 67.1
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 9.7e-61 238.0 224 54.5
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.4e-58 229.6 195 56.4
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 3.4e-58 229.6 213 54.0
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 3.6e-55 219.5 262 39.7
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.3e-51 205.7 161 61.5
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.6e-50 203.4 138 65.2
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 3.4e-50 203.0 193 50.8
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.5e-50 202.6 210 49.5
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 8.5e-49 198.4 160 58.8
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 7.2e-48 195.3 236 41.5
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 2.3e-46 190.3 284 39.4
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.6e-42 176.8 165 60.6
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 7.2e-40 168.7 116 62.9
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.4e-38 164.5 187 47.6
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 2.3e-38 163.7 132 58.3
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.2e-30 136.0 108 51.9
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 3.4e-29 133.3 109 57.8
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 2.7e-26 123.6 143 51.0
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 3.2e-24 116.7 126 51.6
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.4e-22 111.3 76 67.1
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.6e-21 107.1 270 29.6
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 9.8e-21 105.1 87 52.9
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 2.4e-19 100.5 106 43.4
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.2e-18 98.2 71 62.0
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.0e-17 95.1 76 50.0
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 6.6e-17 92.4 70 64.3
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.2e-15 88.2 120 44.2
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 3.9e-09 66.6 34 79.4
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 1.1e-08 65.1 46 60.9
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 2.1e-07 60.8 38 68.4


User provided reference genes

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