Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 0.0e+00 1140.6 578 100.0
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 2.0e-250 869.0 519 85.4
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 9.8e-245 850.1 507 85.2
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.2e-243 845.1 519 81.9
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.2e-243 845.1 519 81.9
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.1e-239 832.4 519 80.9
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 6.6e-233 810.8 567 76.2
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.6e-223 778.5 567 73.7
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.4e-195 686.8 563 66.6
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 5.5e-195 684.9 521 67.9
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.3e-193 679.5 532 65.8
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 6.2e-191 671.4 510 66.5
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.2e-189 667.2 523 66.0
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 4.6e-186 655.2 535 63.4
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 2.3e-185 652.9 519 68.0
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 3.0e-185 652.5 515 65.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.6e-183 646.7 515 64.9
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 4.8e-183 645.2 526 62.7
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 9.0e-182 641.0 520 62.1
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-180 637.1 545 61.3
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.3e-180 637.1 545 61.3
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.9e-180 636.0 522 62.8
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.8e-180 635.6 620 57.9
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 8.5e-180 634.4 520 62.9
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.9e-179 633.3 534 62.2
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.9e-179 633.3 531 62.3
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 5.5e-179 631.7 520 62.5
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 5.5e-179 631.7 526 62.0
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 6.1e-178 628.2 552 61.2
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 2.5e-176 622.9 522 60.5
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 1.3e-175 620.5 510 61.2
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 2.4e-174 616.3 531 60.3
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 5.3e-174 615.1 520 61.0
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 2.0e-173 613.2 518 61.6
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 2.6e-173 612.8 509 62.1
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.7e-172 610.1 550 58.4
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 2.9e-172 609.4 510 61.0
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.8e-169 600.1 529 59.5
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.0e-169 599.4 515 60.8
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.9e-169 599.0 530 59.2
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 8.2e-167 591.3 499 63.3
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 5.3e-166 588.6 506 60.7
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 1.2e-165 587.4 518 59.1
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.2e-162 577.4 541 58.8
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 2.7e-162 576.2 524 57.8
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 6.1e-162 575.1 512 56.8
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 7.9e-162 574.7 512 57.2
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.3e-159 567.4 549 57.6
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.7e-159 567.0 541 56.6
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 4.8e-159 565.5 519 57.6
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 4.1e-158 562.4 531 56.3
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 1.6e-157 560.5 514 57.6
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 2.6e-157 559.7 509 56.8
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 4.5e-157 558.9 522 56.3
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 4.5e-157 558.9 510 57.5
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 5.9e-157 558.5 541 55.8
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.7e-156 557.0 524 56.9
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 2.9e-156 556.2 508 57.5
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 2.9e-156 556.2 523 56.0
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 6.5e-156 555.1 508 57.3
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.1e-155 554.3 473 60.5
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 5.5e-155 552.0 519 57.8
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 3.6e-154 549.3 507 57.4
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.8e-153 547.0 543 52.1
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 3.0e-153 546.2 547 54.1
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.8e-151 538.9 521 55.9
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 2.2e-148 530.0 527 55.6
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.1e-147 527.7 517 55.3
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.5e-147 527.3 542 53.1
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 1.5e-147 527.3 525 54.7
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 4.2e-147 525.8 525 54.7
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 2.7e-146 523.1 521 53.7
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.5e-144 517.3 537 52.7
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 2.0e-144 516.9 525 52.8
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 1.3e-143 514.2 514 54.3
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 9.1e-142 508.1 519 51.8
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.7e-141 506.5 573 49.9
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.0e-140 504.6 522 50.6
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.3e-140 504.2 523 50.3
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.3e-140 504.2 522 52.3
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 5.5e-139 498.8 514 52.5
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 9.5e-139 498.0 513 51.9
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 2.1e-138 496.9 514 52.3
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 2.8e-138 496.5 519 51.8
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 4.7e-138 495.7 522 50.2
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 6.1e-138 495.4 520 49.8
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 8.0e-138 495.0 516 51.7
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.4e-137 494.2 513 51.7
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 4.0e-137 492.7 516 51.6
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.5e-136 490.7 507 51.5
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 2.0e-136 490.3 518 51.9
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 5.7e-136 488.8 520 51.5
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 5.7e-136 488.8 501 51.9
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 9.8e-136 488.0 514 51.9
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 2.4e-134 483.4 518 51.0
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 9.2e-134 481.5 518 50.8
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 2.7e-133 479.9 523 49.9
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 4.5e-133 479.2 503 51.5
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 8.6e-132 474.9 553 47.9
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.9e-131 473.8 515 49.7
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 9.5e-123 444.9 493 51.1
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.1e-122 443.7 509 48.3
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 2.3e-121 440.3 473 51.0
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 4.4e-120 436.0 552 45.8
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.9e-118 430.6 504 49.8
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 4.1e-118 429.5 522 46.0
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.0e-116 422.5 487 46.2
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 3.6e-114 416.4 540 44.3
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 4.7e-114 416.0 502 46.4
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 6.8e-113 412.1 522 46.4
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 4.4e-112 409.5 527 47.1
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 3.9e-108 396.4 525 43.6
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 3.6e-106 389.8 405 53.8
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.4e-102 377.9 523 44.0
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.2e-101 374.8 525 43.2
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.2e-101 374.8 487 43.3
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.5e-96 357.8 560 41.1
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 4.9e-95 352.8 508 40.6
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 3.3e-91 340.1 479 42.6
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.6e-85 319.7 511 40.5
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-81 308.5 503 39.6
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.4e-80 303.5 503 39.4
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.3e-76 290.8 493 37.1
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-74 284.6 464 39.0
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-74 284.6 464 38.8
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 4.1e-65 253.4 513 34.3
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.9e-57 226.1 402 36.8
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.2e-54 216.1 458 34.5
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.2e-54 216.1 458 34.5
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.8e-49 201.4 145 70.3
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 4.1e-49 200.3 286 44.1
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.5e-48 198.4 395 34.2
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.0e-48 198.0 131 68.7
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.0e-47 195.7 317 40.1
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.8e-42 176.8 548 25.7
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.3e-39 168.7 513 29.2
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.2e-38 163.7 540 26.5
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.3e-36 157.9 460 28.9
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.2e-31 141.4 409 29.1
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 1.4e-28 132.1 444 27.5
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 4.5e-24 117.1 423 23.9
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.5e-22 112.1 81 66.7
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 3.6e-21 107.5 486 25.7
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.7e-21 107.1 290 32.8
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.8e-20 105.1 506 22.9
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 7.5e-19 99.8 85 56.5
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.2e-18 98.2 66 69.7
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.7e-18 97.4 185 36.2
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 2.0e-16 91.7 60 71.7
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 2.7e-16 91.3 56 69.6
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 7.8e-16 89.7 372 23.9
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.5e-11 75.5 132 34.8
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 3.4e-11 74.3 87 39.1
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-10 72.4 56 58.9
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.6e-08 65.5 61 45.9


User provided reference genes

Program Settings