Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.9e-173 612.5 323 100.0
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 3.2e-144 515.4 321 85.0
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.8e-142 509.6 321 85.4
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 6.3e-132 474.6 321 79.1
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.1e-131 473.8 312 80.4
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.4e-131 473.4 320 79.4
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 8.2e-116 421.0 302 75.5
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.4e-115 420.2 302 74.8
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 5.3e-99 365.2 280 70.0
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 4.2e-96 355.5 330 62.4
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.6e-95 353.6 325 60.9
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 8.8e-94 347.8 302 66.2
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 4.2e-88 328.9 345 56.2
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 9.5e-88 327.8 326 60.1
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 3.6e-87 325.9 294 61.6
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 6.1e-87 325.1 314 60.8
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 7.5e-85 318.2 281 62.3
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.7e-82 309.7 278 62.2
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 2.7e-82 309.7 321 57.9
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 4.5e-82 308.9 286 63.3
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 7.8e-82 308.1 280 62.1
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 1.7e-81 307.0 309 58.6
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.8e-81 305.8 281 61.9
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 5.0e-81 305.4 308 58.8
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.1e-80 304.3 281 61.6
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.5e-80 303.1 325 57.5
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 2.5e-80 303.1 360 52.5
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 2.8e-79 299.7 321 55.8
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 8.0e-79 298.1 279 60.9
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 2.3e-78 296.6 325 54.2
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 3.0e-78 296.2 262 59.9
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 6.8e-78 295.0 326 54.3
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 2.6e-77 293.1 286 58.0
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.6e-77 293.1 281 58.0
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 1.7e-76 290.4 316 53.5
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 1.4e-75 287.3 307 54.1
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 3.2e-75 286.2 289 55.4
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 1.2e-74 284.3 286 55.6
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 1.6e-74 283.9 325 52.0
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.6e-74 283.9 279 58.4
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.0e-74 283.5 281 57.7
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 2.0e-74 283.5 280 57.1
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.7e-73 280.4 279 57.7
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 2.3e-73 280.0 260 59.6
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 3.0e-73 279.6 325 49.8
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 3.9e-73 279.3 325 49.8
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 3.9e-73 279.3 277 57.0
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 5.0e-73 278.9 270 56.7
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 6.6e-73 278.5 325 48.9
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.5e-72 277.3 326 51.8
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 5.6e-72 275.4 285 56.5
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 5.6e-72 275.4 325 51.4
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 9.5e-72 274.6 301 51.5
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 1.6e-71 273.9 260 58.5
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 2.8e-71 273.1 309 51.8
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 8.0e-71 271.6 325 51.1
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 4.0e-70 269.2 279 53.0
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 4.0e-70 269.2 283 52.7
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 6.8e-70 268.5 292 55.1
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 8.9e-70 268.1 313 51.8
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 1.2e-69 267.7 284 54.9
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 1.5e-69 267.3 321 48.6
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 4.4e-69 265.8 345 48.7
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 5.8e-69 265.4 284 56.7
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 9.8e-69 264.6 287 53.7
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 1.3e-68 264.2 324 47.8
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 1.7e-68 263.8 321 50.5
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.7e-68 262.7 289 55.4
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 4.9e-68 262.3 328 48.5
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 1.4e-67 260.8 292 54.5
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.4e-67 260.8 303 49.5
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 2.4e-67 260.0 306 49.3
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 9.2e-67 258.1 288 54.9
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 3.5e-66 256.1 324 47.2
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 7.8e-66 255.0 286 49.7
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.3e-65 254.2 255 55.7
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.7e-65 253.8 287 50.9
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.3e-65 253.4 273 54.2
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 5.0e-65 252.3 325 51.1
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 8.6e-65 251.5 261 52.5
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 1.9e-64 250.4 278 51.8
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 1.2e-63 247.7 285 50.9
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 1.6e-63 247.3 224 56.7
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.1e-62 244.6 229 57.6
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 3.1e-62 243.0 279 49.1
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 4.0e-62 242.7 285 50.5
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 5.2e-62 242.3 277 49.1
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 8.9e-62 241.5 285 48.4
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 8.9e-62 241.5 279 48.4
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.6e-61 240.0 263 55.1
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 2.6e-61 240.0 280 49.3
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 3.4e-61 239.6 285 47.7
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 5.8e-61 238.8 286 47.9
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.3e-60 237.7 281 48.4
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 2.2e-60 236.9 301 47.8
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 3.7e-60 236.1 277 46.9
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 3.7e-60 236.1 263 54.0
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 4.9e-60 235.7 279 47.7
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.9e-59 233.8 292 48.3
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.4e-59 233.4 326 46.3
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 2.4e-59 233.4 263 53.2
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 3.2e-59 233.0 325 46.8
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 7.1e-59 231.9 322 46.6
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 9.2e-59 231.5 285 46.0
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.2e-58 231.1 285 46.0
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 1.2e-58 231.1 285 46.0
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 1.6e-58 230.7 346 41.9
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 2.7e-58 229.9 389 41.9
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 7.8e-58 228.4 313 45.0
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.3e-57 227.6 249 50.2
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.3e-57 227.6 269 48.0
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 2.3e-57 226.9 286 45.8
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 5.1e-57 225.7 286 45.5
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 8.6e-57 224.9 264 47.3
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.5e-56 224.2 298 48.0
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 1.9e-56 223.8 221 59.7
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 2.8e-55 219.9 206 59.7
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.2e-50 204.5 183 60.7
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.9e-49 199.5 287 43.2
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 8.7e-49 198.4 188 57.4
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 8.7e-49 198.4 258 48.4
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.1e-48 198.0 258 48.4
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 3.6e-47 193.0 222 49.1
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 8.1e-47 191.8 205 51.2
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 2.4e-43 180.3 238 44.5
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 2.1e-42 177.2 205 51.2
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 7.3e-40 168.7 345 35.9
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 2.1e-39 167.2 242 43.8
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.1e-38 164.9 137 62.0
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.8e-38 164.1 204 48.5
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 1.2e-34 151.4 218 40.4
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 3.5e-34 149.8 254 35.8
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 6.7e-33 145.6 256 37.1
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 1.5e-32 144.4 149 49.0
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 2.6e-29 133.7 260 32.7
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 4.5e-29 132.9 241 32.4
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 4.2e-27 126.3 230 42.2
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 2.7e-26 123.6 138 47.1
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 1.5e-24 117.9 137 48.2
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 1.4e-22 111.3 246 35.0
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 5.3e-22 109.4 187 38.5
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 9.0e-22 108.6 238 34.9
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 3.4e-21 106.7 98 67.3
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 5.5e-19 99.4 197 34.5
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 7.9e-18 95.5 213 31.5
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 1.5e-16 91.3 74 62.2
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 2.2e-12 77.4 121 37.2
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 3.8e-12 76.6 181 28.2
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 6.5e-12 75.9 113 45.1
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 6.1e-10 69.3 83 48.2
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 6.1e-10 69.3 170 24.1
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.9e-08 64.3 185 23.2


User provided reference genes

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