Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.0e-40 168.7 87 100.0
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 6.8e-17 90.5 53 84.9
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.2e-13 79.7 53 77.4
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.2e-13 79.7 53 77.4
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 3.5e-13 78.2 53 77.4
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 4.6e-13 77.8 53 77.4
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 6.0e-13 77.4 53 75.5
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 6.0e-13 77.4 53 75.5
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 3.3e-11 71.6 53 67.9
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 5.6e-11 70.9 53 67.9
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 7.3e-11 70.5 53 67.9
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 1.6e-10 69.3 53 66.0
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 2.8e-10 68.6 53 64.2
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.8e-10 68.6 53 67.9
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 3.6e-10 68.2 53 64.2
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 4.8e-10 67.8 51 66.7
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 8.1e-10 67.0 53 64.2
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 8.1e-10 67.0 53 64.2
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 8.1e-10 67.0 53 64.2
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 8.1e-10 67.0 53 64.2
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 8.1e-10 67.0 53 64.2
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 8.1e-10 67.0 53 60.4
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.1e-09 66.6 53 66.0
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.1e-09 66.6 53 64.2
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 1.1e-09 66.6 51 64.7
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 1.1e-09 66.6 52 63.5
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.4e-09 66.2 52 63.5
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 1.8e-09 65.9 52 59.6
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 1.8e-09 65.9 53 62.3
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 2.4e-09 65.5 53 62.3
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 2.4e-09 65.5 53 64.2
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 3.1e-09 65.1 53 62.3
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 3.1e-09 65.1 53 64.2
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 4.0e-09 64.7 53 62.3
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 4.0e-09 64.7 53 62.3
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 4.0e-09 64.7 53 62.3
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 6.9e-09 63.9 53 60.4
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 9.0e-09 63.5 52 63.5
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 9.0e-09 63.5 53 60.4
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 9.0e-09 63.5 53 60.4
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.2e-08 63.2 53 56.6
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.5e-08 62.8 53 62.3
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 2.0e-08 62.4 53 60.4
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 2.6e-08 62.0 51 58.8
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 4.4e-08 61.2 53 56.6
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 4.4e-08 61.2 53 56.6
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 4.4e-08 61.2 53 60.4
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 5.8e-08 60.8 50 62.0
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 5.8e-08 60.8 53 56.6
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 5.8e-08 60.8 53 58.5
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 7.6e-08 60.5 53 54.7
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 9.9e-08 60.1 53 54.7
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 9.9e-08 60.1 53 54.7
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 9.9e-08 60.1 52 57.7
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.3e-07 59.7 52 55.8
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.3e-07 59.7 52 55.8
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.3e-07 59.7 52 55.8
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 1.3e-07 59.7 52 61.5
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 1.7e-07 59.3 53 52.8
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.7e-07 59.3 53 52.8
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 2.2e-07 58.9 53 52.8
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 2.9e-07 58.5 53 54.7
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 2.9e-07 58.5 51 56.9
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 2.9e-07 58.5 51 56.9
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 3.8e-07 58.2 51 54.9
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 6.4e-07 57.4 53 56.6
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 6.4e-07 57.4 53 50.9
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 8.4e-07 57.0 53 54.7
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 8.4e-07 57.0 52 57.7
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 1.1e-06 56.6 53 60.4
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.1e-06 56.6 52 53.8
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.1e-06 56.6 53 50.9
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 1.4e-06 56.2 53 50.9
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 1.4e-06 56.2 51 54.9
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.9e-06 55.8 52 51.9
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.9e-06 55.8 52 51.9
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 3.2e-06 55.1 53 52.8
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 5.4e-06 54.3 40 57.5
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 7.1e-06 53.9 53 52.8


User provided reference genes

Program Settings