Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 0.0e+00 1908.3 995 100.0
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1599.7 970 85.5
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1589.7 971 85.0
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1532.3 970 81.4
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1286.2 820 80.6
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1243.0 979 66.4
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1236.9 972 67.5
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1199.9 970 65.5
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1197.6 970 64.5
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1196.0 970 65.3
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1176.0 969 63.6
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1173.7 969 63.8
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1168.7 972 63.5
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1167.1 973 64.4
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1163.7 970 63.4
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1156.4 970 63.3
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1156.0 974 64.6
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1151.7 969 63.0
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1147.9 970 63.2
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1147.5 983 61.4
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1146.7 983 61.3
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1142.9 972 62.1
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1132.9 983 61.1
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1106.7 972 60.9
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1083.6 1115 55.4
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1078.2 970 59.1
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1077.0 969 59.6
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 6.1e-311 1070.8 1156 53.5
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 6.7e-310 1067.4 974 58.0
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 2.4e-307 1058.9 1048 55.9
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 3.1e-307 1058.5 971 58.4
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 9.1e-307 1057.0 972 58.1
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 2.0e-306 1055.8 971 56.8
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 4.2e-304 1048.1 1015 56.5
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 1.7e-300 1036.2 973 56.8
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 3.7e-300 1035.0 974 56.8
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 2.0e-298 1029.2 967 56.6
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 7.7e-298 1027.3 970 56.2
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 7.7e-298 1027.3 973 56.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 1.0e-297 1026.9 970 56.3
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 8.5e-297 1023.8 1004 54.8
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 4.2e-296 1021.5 969 56.0
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 1.4e-291 1006.5 978 55.4
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 2.4e-291 1005.7 970 55.8
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 5.4e-291 1004.6 970 56.1
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 5.4e-291 1004.6 969 55.1
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 1.6e-290 1003.0 970 56.0
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 4.5e-290 1001.5 967 55.3
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 5.9e-290 1001.1 975 56.1
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 1.0e-289 1000.3 970 55.8
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 1.0e-289 1000.3 970 55.8
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 1.0e-289 1000.3 970 55.8
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 2.2e-289 999.2 970 55.6
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 3.8e-289 998.4 974 55.2
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 4.2e-288 995.0 970 55.4
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 2.1e-287 992.6 969 55.3
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 5.2e-286 988.0 971 53.7
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 1.2e-285 986.9 988 54.7
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 8.3e-284 980.7 971 54.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 5.4e-283 978.0 974 55.1
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 5.4e-283 978.0 971 54.4
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 1.2e-282 976.9 971 53.3
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 5.9e-282 974.5 980 54.2
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.3e-281 972.6 975 54.7
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 5.6e-280 968.0 980 54.0
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 7.3e-280 967.6 943 55.4
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 1.2e-277 960.3 972 53.7
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 8.3e-276 954.1 972 54.8
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 5.9e-274 948.0 970 53.2
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 4.3e-264 915.2 729 65.8
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 9.5e-264 914.1 967 52.0
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 2.1e-263 912.9 966 52.3
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 7.3e-256 887.9 989 49.7
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 4.6e-242 842.0 1059 45.8
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 3.9e-241 839.0 839 54.0
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 5.3e-230 802.0 614 68.9
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 5.5e-227 792.0 972 47.7
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 3.4e-221 772.7 972 46.7
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 2.7e-218 763.1 972 45.1
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 3.3e-216 756.1 1041 42.4
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 7.9e-210 734.9 998 44.0
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.8e-206 723.8 617 62.6
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 5.5e-203 712.2 879 49.0
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.0e-201 708.0 845 47.9
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 7.4e-192 675.2 562 63.0
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 6.3e-191 672.2 1178 37.9
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.6e-189 666.8 456 77.0
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.4e-182 644.4 589 59.6
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 1.4e-182 644.4 1005 42.8
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 3.2e-171 606.7 975 39.9
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 2.0e-160 570.9 973 39.2
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 7.3e-147 525.8 486 57.8
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 2.0e-144 517.7 375 70.4
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.1e-137 495.4 499 54.3
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 2.1e-130 471.1 345 70.1
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 5.4e-126 456.4 633 42.2
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 1.3e-122 445.3 1012 33.9
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.9e-119 433.3 368 60.1
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.7e-111 408.3 1011 31.4
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 1.7e-111 408.3 414 55.1
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 4.9e-111 406.8 431 52.9
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 3.1e-105 387.5 337 59.1
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.2e-94 350.9 339 54.6
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 3.1e-89 334.3 400 50.2
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.1e-83 315.8 618 33.8
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 2.0e-80 305.1 990 28.3
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 3.2e-78 297.7 211 73.5
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.8e-76 292.0 262 60.7
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 5.5e-70 270.4 194 74.2
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.2e-61 242.7 226 58.4
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.1e-54 219.5 424 35.4
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 4.2e-54 217.6 266 49.2
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.0e-52 211.1 202 57.9
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.0e-51 208.8 282 44.7
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.0e-43 182.2 219 47.9
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 4.9e-42 177.6 199 50.8
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 2.0e-40 172.2 132 67.4
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 7.8e-40 170.2 177 54.2
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.7e-39 169.1 176 54.0
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 2.3e-39 168.7 132 62.9
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.0e-39 167.5 142 63.4
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 6.6e-39 167.2 855 25.0
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.2e-36 157.5 131 64.1
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.4e-33 147.5 139 58.3
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.3e-30 138.3 225 40.4
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 9.5e-30 136.7 137 56.2
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.3e-26 126.3 175 41.1
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 8.3e-26 123.6 122 48.4
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 3.0e-23 115.2 139 47.5
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 7.3e-22 110.5 116 48.3
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 1.4e-20 106.3 127 44.9
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.9e-17 95.9 69 71.0
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.9e-17 95.9 69 71.0
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 6.6e-15 87.4 53 81.1
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 3.3e-14 85.1 93 45.2
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 2.8e-13 82.0 52 75.0
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 2.4e-12 79.0 125 44.0
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 1.5e-11 76.3 60 65.0
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 1.1e-09 70.1 64 50.0
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.9e-09 69.3 87 52.9
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 4.2e-09 68.2 108 41.7
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 4.2e-09 68.2 106 42.5
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 7.1e-09 67.4 59 57.6
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 3.0e-07 62.0 78 35.9
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 6.6e-07 60.8 55 56.4
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 6.6e-07 60.8 74 37.8
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 2.5e-06 58.9 55 56.4


User provided reference genes

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