Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 6.1e-126 454.1 227 100.0
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.6e-105 386.3 200 96.5
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 6.8e-101 370.9 227 85.9
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 2.2e-83 312.8 195 79.5
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 1.5e-79 300.1 195 75.9
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 2.1e-73 279.6 188 72.3
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.3e-72 276.9 188 71.8
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 2.1e-70 269.6 185 72.4
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 3.7e-70 268.9 173 74.6
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 8.2e-70 267.7 173 74.0
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 4.1e-69 265.4 167 74.3
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 5.3e-69 265.0 167 76.6
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 4.5e-68 261.9 167 77.8
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 7.6e-68 261.2 167 73.7
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 1.0e-67 260.8 167 73.7
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 3.8e-67 258.8 169 74.0
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 6.5e-67 258.1 166 72.9
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 5.5e-66 255.0 169 72.8
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 1.2e-65 253.8 177 69.5
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 2.7e-65 252.7 167 72.5
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 2.7e-65 252.7 167 73.1
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 3.5e-65 252.3 181 69.6
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.0e-64 250.8 168 71.4
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 1.3e-64 250.4 163 68.7
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.1e-63 247.3 166 70.5
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 1.5e-63 246.9 166 70.5
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 2.5e-63 246.1 168 70.8
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 4.3e-63 245.4 188 60.6
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 9.7e-63 244.2 199 61.8
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.6e-62 243.4 171 69.0
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 1.6e-62 243.4 178 65.2
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.2e-62 243.0 166 68.7
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 3.7e-62 242.3 168 69.0
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 1.1e-61 240.7 178 61.8
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 1.8e-61 240.0 174 63.2
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 1.8e-61 240.0 161 71.4
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 2.4e-61 239.6 167 66.5
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.1e-61 239.2 199 61.3
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 6.9e-61 238.0 172 68.0
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 1.2e-60 237.3 174 66.7
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.5e-60 236.9 165 67.9
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 3.4e-60 235.7 170 67.1
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 4.5e-60 235.3 170 64.1
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 5.9e-60 235.0 168 66.7
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 5.9e-60 235.0 168 66.1
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 1.0e-59 234.2 166 66.3
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.3e-59 233.8 168 66.1
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.7e-59 233.4 170 67.1
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 2.2e-59 233.0 173 60.7
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 2.9e-59 232.6 168 62.5
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.4e-58 230.3 166 64.5
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 2.5e-58 229.6 168 66.1
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 5.5e-58 228.4 167 62.9
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 9.4e-58 227.6 175 61.7
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 1.2e-57 227.3 167 66.5
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 2.1e-57 226.5 173 60.1
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 4.6e-57 225.3 173 59.5
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 4.6e-57 225.3 173 59.5
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 4.6e-57 225.3 173 59.5
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 2.3e-56 223.0 169 62.7
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 3.9e-56 222.2 167 61.1
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 3.9e-56 222.2 184 59.2
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 1.1e-55 220.7 166 63.3
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 1.1e-55 220.7 159 65.4
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 4.3e-55 218.8 168 58.3
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 4.3e-55 218.8 167 61.1
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 5.7e-55 218.4 168 61.9
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.3e-54 217.2 179 56.4
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 2.8e-54 216.1 173 57.8
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 4.8e-54 215.3 166 63.9
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 1.5e-52 210.3 174 54.6
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.3e-51 207.2 162 59.3
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 5.0e-51 205.3 187 52.4
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 4.2e-50 202.2 166 59.0
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 7.9e-49 198.0 175 53.7
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 2.3e-48 196.4 138 65.9
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 4.4e-47 192.2 153 53.6
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 5.3e-45 185.3 132 67.4
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 4.7e-41 172.2 137 55.5
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.5e-36 155.6 110 67.3
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 5.9e-36 155.2 89 83.1
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 1.2e-33 147.5 169 43.8
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.8e-29 133.7 80 75.0
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 9.1e-29 131.3 156 39.7
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 1.5e-26 124.0 110 53.6
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 4.7e-25 119.0 162 40.7
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 4.7e-25 119.0 136 45.6
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 5.2e-24 115.5 64 89.1
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 6.8e-24 115.2 172 39.0
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 9.1e-21 104.8 64 75.0
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 7.8e-12 75.1 66 50.0
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 3.9e-11 72.8 43 81.4
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 5.6e-10 68.9 139 26.6
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 3.6e-09 66.2 137 26.3
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 3.6e-09 66.2 137 26.3
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 6.2e-09 65.5 169 30.2
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 6.2e-09 65.5 126 30.2
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 6.2e-09 65.5 139 26.6
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 1.8e-08 63.9 126 29.4
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 4.0e-08 62.8 135 26.7
Gorai.010G192200 Gossypium raimondii HOM05D005973 ORTHO05D007285 1.2e-07 61.2 183 26.8
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 1.2e-07 61.2 139 26.6
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 1.5e-07 60.8 133 24.8
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 1.5e-07 60.8 134 26.1
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 1.5e-07 60.8 134 25.4
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 1.5e-07 60.8 144 30.6
Thhalv10006683m.g Eutrema salsugineum HOM05D007128 ORTHO05D009059 1.5e-07 60.8 173 28.3
Lsat_1_v5_gn_8_99341 Lactuca sativa HOM05D008470 ORTHO05D010644 1.5e-07 60.8 139 27.3
Pp3c1_6490 Physcomitrium patens HOM05D006749 ORTHO05D008352 2.0e-07 60.5 155 25.8
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 2.0e-07 60.5 146 30.8
AL1G16720 Arabidopsis lyrata HOM05D007128 ORTHO05D009059 2.6e-07 60.1 172 28.5
CARHR006390 Cardamine hirsuta HOM05D007128 ORTHO05D009059 2.6e-07 60.1 176 29.5
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 2.6e-07 60.1 133 29.3
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 2.6e-07 60.1 144 31.2
THA.LOC104826248 Tarenaya hassleriana HOM05D007128 ORTHO05D009059 2.6e-07 60.1 146 29.5
Ciclev10018682m.g Citrus clementina HOM05D007128 ORTHO05D009059 3.4e-07 59.7 142 28.9
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 3.4e-07 59.7 143 28.7
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 3.4e-07 59.7 184 27.7
PGR083G1825 Punica granatum HOM05D007128 ORTHO05D009059 3.4e-07 59.7 201 22.9
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 4.4e-07 59.3 143 30.8
Ca_24431_v3 Cicer arietinum L. HOM05D007128 ORTHO05D009059 4.4e-07 59.3 136 25.0
CsaV3_6G003710 Cucumis sativus L. HOM05D007128 ORTHO05D009059 4.4e-07 59.3 143 28.7
A05p32770 Brassica napus HOM05D002444 ORTHO05D040376 5.8e-07 58.9 54 44.4
BraA05t22099Z Brassica rapa HOM05D002444 ORTHO05D040376 5.8e-07 58.9 54 44.4
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 5.8e-07 58.9 135 25.9
Thecc.10G003600 Theobroma cacao HOM05D005973 ORTHO05D007285 5.8e-07 58.9 184 26.6
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 7.5e-07 58.5 126 26.2
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 7.5e-07 58.5 119 26.1
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 7.5e-07 58.5 150 28.7
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 9.8e-07 58.2 148 29.7
COL.COLO4_19343 Corchorus olitorius HOM05D005973 ORTHO05D007285 9.8e-07 58.2 182 26.4
Solyc02g081250.3 Solanum lycopersicum HOM05D000189 ORTHO05D009059 9.8e-07 58.2 146 30.1
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 1.3e-06 57.8 140 28.6
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 1.3e-06 57.8 143 26.6
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 1.3e-06 57.8 136 26.5
Gohir.A06G158900 Gossypium hirsutum HOM05D005973 ORTHO05D007285 1.3e-06 57.8 156 26.9
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 1.3e-06 57.8 141 27.7
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 1.7e-06 57.4 134 24.6
Psat2g189360 Pisum sativum HOM05D007128 ORTHO05D009059 1.7e-06 57.4 138 26.8
Sed0021713 Sechium edule HOM05D007128 ORTHO05D009059 1.7e-06 57.4 144 27.1
AUR62004993 Chenopodium quinoa HOM05D007128 ORTHO05D009059 2.2e-06 57.0 143 26.6
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 2.2e-06 57.0 133 22.6
Medtr5g007250 Medicago truncatula HOM05D007128 ORTHO05D009059 2.2e-06 57.0 134 26.1
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 2.2e-06 57.0 146 30.1
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 2.9e-06 56.6 148 29.1
Carub.0001s0604 Capsella rubella HOM05D007128 ORTHO05D009059 2.9e-06 56.6 176 27.3
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 2.9e-06 56.6 142 28.9
Sp1g05440 Schrenkiella parvula HOM05D007128 ORTHO05D009059 2.9e-06 56.6 173 27.7
Cfa008759 Carpinus fangiana HOM05D007202 ORTHO05D009125 3.7e-06 56.2 142 30.3
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 3.7e-06 56.2 143 28.0
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 3.7e-06 56.2 174 25.9
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 3.7e-06 56.2 141 28.4
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 4.9e-06 55.8 192 26.0
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 4.9e-06 55.8 134 24.6
AL5G28320 Arabidopsis lyrata HOM05D007409 ORTHO05D009264 4.9e-06 55.8 119 27.7
AT3G48810 Arabidopsis thaliana HOM05D007409 ORTHO05D009264 4.9e-06 55.8 119 27.7
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 4.9e-06 55.8 143 28.0
MELO3C011605.2 Cucumis melo HOM05D007128 ORTHO05D009059 4.9e-06 55.8 147 27.9
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 4.9e-06 55.8 178 25.8
Nn5g27627 Nelumbo nucifera HOM05D007128 ORTHO05D009059 4.9e-06 55.8 142 27.5
Potri.007G123600 Populus trichocarpa HOM05D007128 ORTHO05D009059 4.9e-06 55.8 145 28.3
QL10p046158 Quercus lobata HOM05D007128 ORTHO05D009059 4.9e-06 55.8 144 27.1
Sabra07G0100100 Salix brachista HOM05D007128 ORTHO05D009059 4.9e-06 55.8 145 27.6
CiPaw.01G104100 Carya illinoinensis HOM05D007128 ORTHO05D009059 6.4e-06 55.5 144 26.4
CiPaw.06G061800 Carya illinoinensis HOM05D007202 ORTHO05D009125 6.4e-06 55.5 134 29.9
Glyma.11G009000 Glycine max HOM05D007128 ORTHO05D009059 6.4e-06 55.5 139 28.1
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 6.4e-06 55.5 208 25.0
Aa31LG1G7750 Aethionema arabicum HOM05D007128 ORTHO05D009059 8.3e-06 55.1 146 28.8
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 8.3e-06 55.1 185 21.6
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 8.3e-06 55.1 186 25.3
Gohir.D06G164800 Gossypium hirsutum HOM05D005973 ORTHO05D007285 8.3e-06 55.1 183 25.7


User provided reference genes

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