Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 2.0e-83 312.4 159 100.0
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 2.8e-77 292.0 156 93.6
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 1.2e-75 286.6 155 92.3
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.6e-75 286.2 157 91.1
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 7.7e-75 283.9 156 91.0
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 7.7e-75 283.9 156 91.0
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.3e-74 283.1 156 91.0
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 2.9e-74 282.0 156 90.4
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 2.5e-73 278.9 159 88.1
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 2.1e-72 275.8 159 88.1
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 2.1e-72 275.8 159 88.1
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 2.1e-72 275.8 159 84.9
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 4.7e-72 274.6 158 85.4
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 8.0e-72 273.9 159 86.2
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 5.7e-70 267.7 156 87.2
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 1.7e-69 266.2 159 83.6
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 2.8e-69 265.4 159 83.0
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 3.7e-69 265.0 156 85.9
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 8.3e-69 263.8 157 84.7
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.1e-68 263.5 156 84.0
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 1.4e-68 263.1 159 82.4
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 1.4e-68 263.1 159 82.4
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.8e-68 262.7 157 84.1
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 2.4e-68 262.3 159 82.4
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 3.1e-68 261.9 183 76.5
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 5.4e-68 261.2 156 85.3
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 1.6e-67 259.6 159 81.8
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 2.0e-67 259.2 149 87.2
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 1.0e-66 256.9 159 81.1
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 2.9e-66 255.4 153 85.6
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 3.8e-66 255.0 159 80.5
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 3.8e-66 255.0 164 80.5
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 8.5e-66 253.8 155 80.6
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 1.5e-65 253.1 156 82.7
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 2.5e-65 252.3 164 81.1
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 2.5e-65 252.3 156 80.8
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 3.2e-65 251.9 156 80.8
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 4.2e-65 251.5 159 78.6
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 5.5e-65 251.1 159 78.6
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 5.5e-65 251.1 159 78.6
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 5.5e-65 251.1 159 78.0
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 7.2e-65 250.8 159 78.0
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 1.2e-64 250.0 173 74.6
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 1.2e-64 250.0 159 79.9
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 2.7e-64 248.8 159 76.7
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 4.7e-64 248.1 167 76.0
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 8.0e-64 247.3 152 81.6
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 1.0e-63 246.9 159 77.4
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 2.3e-63 245.7 181 71.3
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 3.0e-63 245.4 159 77.4
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 6.8e-63 244.2 156 76.9
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 8.8e-63 243.8 156 77.6
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 8.8e-63 243.8 145 82.1
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 2.0e-62 242.7 159 75.5
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 2.6e-62 242.3 156 76.9
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 2.6e-62 242.3 160 75.6
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 3.4e-62 241.9 156 76.9
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 7.5e-62 240.7 159 76.7
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 2.8e-61 238.8 160 75.6
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 2.8e-61 238.8 156 75.6
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 3.7e-61 238.4 167 73.7
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 3.7e-61 238.4 159 74.2
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 6.3e-61 237.7 154 79.9
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 6.3e-61 237.7 158 77.2
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 6.3e-61 237.7 159 73.6
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 1.1e-60 236.9 159 74.8
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 1.4e-60 236.5 156 75.0
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 2.4e-60 235.7 156 75.0
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 3.1e-60 235.3 152 80.3
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 5.4e-60 234.6 157 74.5
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 9.1e-60 233.8 150 77.3
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 9.1e-60 233.8 153 76.5
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 1.2e-59 233.4 151 77.5
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 1.2e-59 233.4 159 74.2
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 1.6e-59 233.0 156 75.0
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 2.0e-59 232.6 156 75.0
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 2.0e-59 232.6 156 75.0
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 2.7e-59 232.3 156 75.0
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 3.5e-59 231.9 159 73.6
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 7.7e-59 230.7 156 76.3
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 1.7e-58 229.6 154 76.6
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 1.7e-58 229.6 156 75.6
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 2.3e-58 229.2 165 70.9
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 5.0e-58 228.0 159 71.7
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 6.6e-58 227.6 166 69.9
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 8.6e-58 227.3 155 72.9
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 3.6e-56 221.9 161 70.2
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 6.1e-56 221.1 156 71.2
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 8.0e-56 220.7 155 71.6
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 6.8e-55 217.6 145 74.5
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 6.8e-55 217.6 146 76.7
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 1.5e-54 216.5 156 66.7
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 4.4e-54 214.9 156 70.5
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 2.4e-52 209.1 163 68.7
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 4.6e-51 204.9 156 68.6
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 6.2e-48 194.5 122 82.8
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 2.9e-45 185.7 159 63.5
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 8.3e-45 184.1 120 74.2
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 7.0e-44 181.0 146 70.5
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 4.7e-40 168.3 155 56.1
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 3.4e-38 162.2 156 57.7
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 7.1e-36 154.5 154 51.3
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 6.0e-35 151.4 90 81.1
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 9.5e-33 144.1 85 85.9
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 4.0e-31 138.7 81 85.2
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 1.2e-30 137.1 79 86.1
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 7.1e-28 127.9 161 46.0
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 3.5e-27 125.6 155 44.5
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 5.1e-26 121.7 73 82.2
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.1e-25 120.6 82 73.2
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 6.2e-24 114.8 74 79.7
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.8e-23 113.2 72 79.2
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 5.8e-22 108.2 66 75.8
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 9.9e-22 107.5 65 76.9
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 1.3e-21 107.1 152 43.4
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 7.1e-20 101.3 231 32.9
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.6e-16 90.1 85 64.7
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 8.1e-16 87.8 61 72.1
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 2.4e-15 86.3 67 65.7
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 3.9e-10 68.9 66 51.5
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 1.1e-07 60.8 78 41.0


User provided reference genes

Program Settings