Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 2.0e-155 552.4 275 100.0
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 1.2e-128 463.4 249 89.6
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 1.2e-118 430.3 249 84.3
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 7.5e-118 427.6 246 82.5
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 5.4e-116 421.4 249 81.9
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 7.0e-116 421.0 246 81.3
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 4.5e-115 418.3 249 77.9
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 1.9e-113 412.9 252 75.8
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 3.2e-113 412.1 246 80.1
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 4.2e-113 411.8 250 80.0
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 9.4e-113 410.6 246 80.9
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 4.7e-112 408.3 246 80.5
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 5.2e-111 404.8 245 79.2
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 5.2e-111 404.8 244 79.1
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 6.8e-111 404.4 244 78.7
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 2.0e-110 402.9 244 78.7
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 3.4e-110 402.1 249 77.1
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 3.4e-110 402.1 245 79.2
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 4.9e-109 398.3 247 75.3
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 1.4e-108 396.7 247 74.9
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 1.3e-106 390.2 247 74.9
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 2.3e-106 389.4 252 74.2
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 2.3e-106 389.4 255 77.6
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 1.1e-105 387.1 247 75.3
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 1.9e-105 386.3 248 73.8
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 1.9e-105 386.3 248 73.8
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 2.5e-105 386.0 251 72.5
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 3.3e-105 385.6 251 72.5
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 3.3e-105 385.6 248 74.2
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 4.2e-105 385.2 251 72.5
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 4.2e-105 385.2 250 71.6
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 6.1e-104 381.3 249 74.3
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 5.7e-102 374.8 246 73.6
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 1.2e-99 367.1 208 82.2
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 1.6e-99 366.7 248 71.8
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 1.3e-98 363.6 249 73.5
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 3.9e-98 362.1 208 80.8
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 2.8e-96 355.9 249 71.9
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 1.0e-95 354.0 249 71.5
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 4.0e-95 352.1 245 68.6
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 4.9e-93 345.1 249 69.5
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 6.4e-93 344.7 226 71.7
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 1.9e-92 343.2 248 67.7
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 3.2e-92 342.4 246 69.1
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 1.2e-91 340.5 247 66.0
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 2.0e-91 339.7 249 64.7
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 4.6e-91 338.6 247 68.4
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 7.8e-91 337.8 249 68.7
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 1.7e-90 336.7 249 68.3
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 8.6e-90 334.3 248 66.5
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 1.1e-89 334.0 210 74.3
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 1.1e-89 334.0 245 66.1
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 1.1e-89 334.0 247 67.6
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 2.5e-89 332.8 246 67.9
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 4.3e-89 332.0 249 64.3
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 2.8e-88 329.3 246 62.6
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 8.1e-88 327.8 246 66.7
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 1.1e-87 327.4 246 66.7
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 1.1e-87 327.4 244 66.4
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 5.2e-87 325.1 246 65.4
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 8.9e-87 324.3 246 66.7
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 1.2e-86 323.9 246 65.4
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 1.5e-86 323.6 249 65.5
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 2.6e-86 322.8 246 65.0
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 3.4e-86 322.4 251 65.3
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 2.2e-85 319.7 252 65.5
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 2.9e-85 319.3 246 64.2
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 4.9e-85 318.5 293 56.3
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 6.4e-85 318.2 247 62.8
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 8.3e-85 317.8 251 63.3
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 1.1e-84 317.4 249 64.7
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 1.1e-84 317.4 244 63.5
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 1.4e-84 317.0 246 63.8
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 1.4e-84 317.0 249 64.3
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 2.4e-84 316.2 246 64.2
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 2.4e-84 316.2 246 65.4
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 3.2e-84 315.8 250 63.2
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 4.1e-84 315.5 248 64.9
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 7.1e-84 314.7 246 65.4
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 7.1e-84 314.7 172 86.6
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 1.2e-83 313.9 247 64.0
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 2.7e-83 312.8 244 63.9
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 2.7e-83 312.8 250 64.4
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 2.7e-83 312.8 250 64.4
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 3.5e-83 312.4 248 62.9
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 4.6e-83 312.0 246 63.0
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 6.0e-83 311.6 242 64.0
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 1.7e-82 310.1 244 63.1
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 3.0e-82 309.3 246 63.0
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 2.5e-81 306.2 244 63.1
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 7.3e-81 304.7 250 63.6
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 1.6e-80 303.5 244 62.7
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 6.2e-80 301.6 250 60.4
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 1.1e-79 300.8 252 62.3
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 1.1e-79 300.8 251 60.6
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 8.9e-79 297.7 254 59.4
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 2.0e-78 296.6 246 60.2
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 1.3e-77 293.9 249 58.2
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 2.2e-77 293.1 249 58.2
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 2.9e-77 292.7 246 60.2
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 4.9e-77 292.0 249 58.2
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 1.1e-76 290.8 249 58.6
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 1.9e-73 280.0 246 58.5
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 6.2e-72 275.0 249 55.0
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 1.2e-70 270.8 157 82.2
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 2.9e-69 266.2 250 53.2
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 8.7e-66 254.6 246 52.8
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 3.6e-64 249.2 305 42.6
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 6.0e-59 231.9 250 48.4
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 7.9e-59 231.5 138 77.5
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 2.1e-51 206.8 126 75.4
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.9e-49 200.3 121 74.4
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 1.8e-47 193.7 257 39.3
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 3.9e-42 176.0 94 84.0
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 1.3e-29 134.4 101 62.4
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-29 131.7 157 45.2
GSVIVG01038121001 Vitis vinifera HOM05D006600 ORTHO05D008446 2.1e-27 127.1 93 66.7
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 1.1e-20 104.8 120 50.0
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 3.9e-18 96.3 87 62.1
Actinidia08259 Actinidia chinensis HOM05D006600 ORTHO05D008446 6.1e-11 72.4 47 72.3
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 4.8e-08 62.8 68 45.6
Thecc.02G275700 Theobroma cacao HOM05D002893 ORTHO05D003387 3.1e-07 60.1 105 35.2
Prupe.6G259700 Prunus persica HOM05D037056 ORTHO05D335045 4.1e-07 59.7 48 60.4
AUR62005585 Chenopodium quinoa HOM05D002893 ORTHO05D003387 5.3e-07 59.3 102 36.3
AUR62024145 Chenopodium quinoa HOM05D002893 ORTHO05D003387 5.3e-07 59.3 102 36.3
MELO3C023799.2 Cucumis melo HOM05D006600 ORTHO05D168989 7.0e-07 58.9 73 45.2
Prupe.1G327800 Prunus persica HOM05D037056 ORTHO05D335556 9.1e-07 58.5 48 60.4
Oeu058769.1 Olea europaea HOM05D002893 ORTHO05D003387 1.6e-06 57.8 102 37.3
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 2.0e-06 57.4 67 47.8
Actinidia22678 Actinidia chinensis HOM05D006600 ORTHO05D008446 2.7e-06 57.0 50 58.0
Prupe.8G103600 Prunus persica HOM05D037056 ORTHO05D336041 2.7e-06 57.0 48 58.3
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 3.5e-06 56.6 60 48.3
EL10Ac6g13460 Beta vulgaris HOM05D002893 ORTHO05D003387 4.5e-06 56.2 102 35.3
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 4.5e-06 56.2 83 36.1
SGA_v2.0_scaffold87G27135 Striga asiatica HOM05D002893 ORTHO05D008562 5.9e-06 55.8 104 35.6
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 7.7e-06 55.5 60 48.3


User provided reference genes

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