Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_28527 Corchorus olitorius HOM05D002570 ORTHO05D002689 1.0e-54 216.5 107 100.0
Thecc.08G091100 Theobroma cacao HOM05D002570 ORTHO05D002689 1.9e-24 115.9 63 84.1
Duzib116G0240 Durio zibethinus HOM05D002570 ORTHO05D002689 1.1e-19 100.1 70 70.0
Gorai.005G099800 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.2e-18 96.7 74 67.6
Gohir.A02G081500 Gossypium hirsutum HOM05D002570 ORTHO05D002689 3.4e-18 95.1 74 66.2
Gohir.D02G089132 Gossypium hirsutum HOM05D002570 ORTHO05D002689 4.5e-18 94.7 74 64.9
Duzib041G0717 Durio zibethinus HOM05D002570 ORTHO05D002689 1.3e-17 93.2 63 77.8
CiPaw.07G176800 Carya illinoinensis HOM05D002570 ORTHO05D002689 6.4e-17 90.9 63 71.4
Hma1.2p1_0819F.1_g223830 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 5.5e-16 87.8 63 65.1
GSVIVG01009363001 Vitis vinifera HOM05D002570 ORTHO05D002689 9.3e-16 87.0 74 59.5
Ciclev10002925m.g Citrus clementina HOM05D002570 ORTHO05D002689 2.7e-15 85.5 61 68.9
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.3e-14 83.2 70 58.6
TAR381G1276 Trochodendron aralioides HOM05D001633 ORTHO05D002880 1.3e-14 83.2 70 58.6
vmacro21448 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.3e-14 83.2 63 61.9
Gohir.D05G211800 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.8e-14 82.8 62 62.9
Gohir.A05G208300 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.3e-14 82.4 60 60.0
Hma1.2p1_0177F.1_g077950 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 2.3e-14 82.4 60 63.3
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 3.9e-14 81.6 73 54.8
Gorai.009G218400 Gossypium raimondii HOM05D002570 ORTHO05D002689 5.1e-14 81.3 60 63.3
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 5.1e-14 81.3 62 58.1
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 1.1e-13 80.1 63 66.7
TWI56G1429 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 1.9e-13 79.3 59 59.3
QL12p037631 Quercus lobata HOM05D002570 ORTHO05D002689 4.3e-13 78.2 60 65.0
Manes.18G044800 Manihot esculenta HOM05D002570 ORTHO05D002689 9.6e-13 77.0 61 60.7
CSS0011900 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.3e-12 76.6 63 58.7
Cpa.g.sc21.103 Carica papaya HOM05D002570 ORTHO05D002689 2.1e-12 75.9 61 59.0
Eucgr.F00117 Eucalyptus grandis HOM05D002570 ORTHO05D002689 2.1e-12 75.9 70 57.1
Peaxi162Scf00081g01321 Petunia axillaris HOM05D002570 ORTHO05D002689 2.1e-12 75.9 63 55.6
Nitab4.5_0000934g0050 Nicotiana tabacum HOM05D002570 ORTHO05D002689 4.8e-12 74.7 64 56.2
Nitab4.5_0011511g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 4.8e-12 74.7 64 56.2
PGR083G0844 Punica granatum HOM05D002570 ORTHO05D002689 1.1e-11 73.6 57 64.9
PGSC0003DMG400021530 Solanum tuberosum HOM05D002570 ORTHO05D002689 1.8e-11 72.8 63 50.8
Manes.05G180500 Manihot esculenta HOM05D002570 ORTHO05D002689 4.0e-11 71.6 61 55.7
MELO3C032377.2 Cucumis melo HOM05D002570 ORTHO05D002689 5.3e-11 71.2 62 59.7
Atru.chr13.811 Acer truncatum HOM05D002570 ORTHO05D002689 6.9e-11 70.9 63 55.6
Prupe.1G424900 Prunus persica HOM05D002570 ORTHO05D002689 2.0e-10 69.3 64 56.2
Glyma.13G068400 Glycine max HOM05D002570 ORTHO05D002689 4.5e-10 68.2 79 46.8
Phvul.004G022100 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 5.8e-10 67.8 81 45.7
RcHm_v2.0_Chr6g0309331 Rosa chinensis HOM05D002570 ORTHO05D002689 5.8e-10 67.8 67 50.7
Rhsim07G0221300 Rhododendron simsii HOM05D002570 ORTHO05D002689 1.0e-09 67.0 64 53.1
Glyma.19G015500 Glycine max HOM05D002570 ORTHO05D002689 1.3e-09 66.6 75 48.0
Sed0024363 Sechium edule HOM05D002570 ORTHO05D002689 1.3e-09 66.6 62 54.8
Potri.002G119700 Populus trichocarpa HOM05D002570 ORTHO05D002689 1.7e-09 66.2 53 56.6
PGSC0003DMG400000865 Solanum tuberosum HOM05D002570 ORTHO05D002689 3.8e-09 65.1 63 47.6
AUR62032321 Chenopodium quinoa HOM05D002570 ORTHO05D002689 4.9e-09 64.7 64 54.7
Nn5g30532 Nelumbo nucifera HOM05D002570 ORTHO05D002689 6.5e-09 64.3 60 48.3
Sc02g0007790 Simmondsia chinensis HOM05D002570 ORTHO05D002689 6.5e-09 64.3 70 50.0
Sopen01g006400 Solanum pennellii HOM05D000017 ORTHO05D000013 8.4e-09 63.9 64 42.2
TPR.G32582 Trifolium pratense HOM05D002570 ORTHO05D002689 8.4e-09 63.9 72 48.6
Migut.N02768 Erythranthe guttata HOM05D002570 ORTHO05D002689 1.4e-08 63.2 63 46.0
MD15G1072200 Malus domestica HOM05D003189 ORTHO05D003449 1.4e-08 63.2 66 50.0
Sabra02G0094200 Salix brachista HOM05D002570 ORTHO05D002689 1.4e-08 63.2 53 56.6
Hund09510 Selenicereus undatus HOM05D002570 ORTHO05D002689 1.4e-08 63.2 55 54.5
THA.LOC104825766 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 2.5e-08 62.4 61 52.5
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 3.2e-08 62.0 55 60.0
Psat1g078440 Pisum sativum HOM05D002570 ORTHO05D002689 3.2e-08 62.0 72 48.6
arahy.Tifrunner.gnm1.ann1.N56UGC Arachis hypogaea HOM05D002570 ORTHO05D002689 5.5e-08 61.2 71 47.9
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 5.5e-08 61.2 61 52.5
Medtr6g008680 Medicago truncatula HOM05D002570 ORTHO05D002689 5.5e-08 61.2 66 50.0
Lj2g0012585 Lotus japonicus HOM05D002570 ORTHO05D002689 7.1e-08 60.8 66 51.5
MD15G1072300 Malus domestica HOM05D002570 ORTHO05D002689 7.1e-08 60.8 72 44.4
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 9.3e-08 60.5 59 49.2
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 9.3e-08 60.5 48 62.5
Cc10_g05610 Coffea canephora HOM05D002570 ORTHO05D002689 1.6e-07 59.7 59 47.5
vmacro22064 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 2.1e-07 59.3 63 44.4
HPP92_015713 Vanilla planifolia HOM05D002570 ORTHO05D002689 2.7e-07 58.9 75 45.3
arahy.Tifrunner.gnm1.ann1.CN16C1 Arachis hypogaea HOM05D002570 ORTHO05D002689 4.6e-07 58.2 69 47.8
FAN15G3341 Fragaria x ananassa HOM05D002570 ORTHO05D002689 6.0e-07 57.8 56 51.8
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 7.9e-07 57.4 50 50.0
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.9e-07 57.4 50 52.0
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.9e-07 57.4 50 52.0
EL10Ac5g10534 Beta vulgaris HOM05D002570 ORTHO05D002689 1.0e-06 57.0 65 49.2
Aqoxy6G02718 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 1.3e-06 56.6 57 38.6
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 1.3e-06 56.6 60 46.7
SalBow6G3045 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.3e-06 56.6 37 59.5
SalBow8G2749 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.3e-06 56.6 37 59.5
Ah.11g050420 Amaranthus hybridus HOM05D002570 ORTHO05D002689 1.8e-06 56.2 53 49.1
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 2.3e-06 55.8 51 56.9
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 3.0e-06 55.5 53 47.2
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 3.0e-06 55.5 53 47.2
ATR0030G054 Amborella trichopoda HOM05D002570 ORTHO05D002689 3.9e-06 55.1 61 45.9
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 5.1e-06 54.7 50 50.0
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 5.1e-06 54.7 38 63.2
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 5.1e-06 54.7 50 48.0
unitig_578.g16139 Utricularia gibba HOM05D002570 ORTHO05D002689 5.1e-06 54.7 36 61.1
Aqoxy5G00897 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 6.7e-06 54.3 53 49.1
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 6.7e-06 54.3 38 68.4
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 6.7e-06 54.3 53 47.2
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 6.7e-06 54.3 53 47.2
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 6.7e-06 54.3 60 48.3
HPP92_026648 Vanilla planifolia HOM05D002570 ORTHO05D002689 6.7e-06 54.3 75 42.7
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 8.7e-06 53.9 54 51.9
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 8.7e-06 53.9 54 51.9
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 8.7e-06 53.9 59 44.1
MBI16_g22819_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 8.7e-06 53.9 66 42.4
Sc05g0001400 Simmondsia chinensis HOM05D002570 ORTHO05D002689 8.7e-06 53.9 52 46.2
HPP92_012494 Vanilla planifolia HOM05D002570 ORTHO05D002689 8.7e-06 53.9 50 52.0


User provided reference genes

Program Settings