Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.0e-239 832.0 425 100.0
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 7.0e-216 753.8 425 86.8
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.8e-210 734.2 425 85.4
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.7e-209 731.5 425 85.4
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 4.9e-209 731.1 425 85.2
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.7e-198 696.0 425 78.8
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.1e-195 686.8 422 82.2
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.4e-195 686.4 427 78.0
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 3.1e-195 685.3 426 78.2
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.7e-193 679.5 426 77.7
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.9e-192 676.0 426 78.9
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 6.6e-190 667.5 425 76.7
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 4.3e-189 664.8 425 75.8
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 4.3e-189 664.8 425 78.1
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 2.9e-185 652.1 424 77.8
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 6.4e-185 651.0 426 74.9
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 7.3e-181 637.5 426 77.0
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 7.3e-181 637.5 422 73.0
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 7.3e-181 637.5 430 71.6
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.8e-179 632.9 435 72.0
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 9.0e-179 630.6 423 72.6
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 3.4e-178 628.6 425 72.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 3.4e-178 628.6 425 72.2
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 3.4e-178 628.6 425 75.3
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 5.8e-178 627.9 422 76.3
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 5.8e-178 627.9 422 76.5
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 9.9e-178 627.1 425 71.8
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 1.7e-177 626.3 425 72.0
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.9e-176 622.9 435 70.8
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.9e-176 622.9 425 72.9
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 2.4e-176 622.5 425 71.1
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 3.2e-176 622.1 425 72.5
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 4.2e-176 621.7 429 71.3
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 5.4e-176 621.3 423 71.2
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 7.1e-176 620.9 425 69.4
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 6.0e-175 617.8 425 70.1
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 6.0e-175 617.8 435 70.3
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.0e-174 617.1 423 69.7
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 1.0e-174 617.1 423 70.4
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.3e-174 616.7 427 71.9
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.3e-174 616.7 425 70.1
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 2.3e-174 615.9 427 72.8
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 8.7e-174 614.0 425 69.6
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 2.5e-173 612.5 423 70.2
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 2.5e-173 612.5 424 70.5
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 2.5e-173 612.5 425 72.5
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 7.4e-173 610.9 388 76.8
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.3e-172 610.1 408 71.1
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.6e-172 609.8 416 74.0
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 2.1e-172 609.4 423 70.0
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.1e-172 609.4 426 71.1
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 2.8e-172 609.0 424 70.0
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 6.2e-172 607.8 442 71.7
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 6.2e-172 607.8 430 73.5
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.1e-171 607.1 425 68.2
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 4.0e-171 605.1 434 72.4
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 5.3e-171 604.7 429 69.5
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 2.6e-170 602.4 433 68.6
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 2.4e-168 595.9 419 70.6
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 4.2e-168 595.1 492 67.1
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 5.5e-168 594.7 428 68.9
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 5.5e-168 594.7 426 68.5
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.6e-167 593.2 454 69.2
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 2.1e-167 592.8 427 68.4
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.5e-167 592.0 386 76.9
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 7.9e-167 590.9 425 68.5
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 6.7e-166 587.8 425 68.9
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 8.7e-166 587.4 419 69.7
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.9e-165 586.3 426 72.1
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 2.5e-165 585.9 426 69.7
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 4.3e-165 585.1 429 67.8
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.3e-164 583.6 419 71.1
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.6e-164 583.2 429 67.6
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 4.8e-164 581.6 458 64.6
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 6.2e-164 581.3 436 69.3
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 1.2e-162 577.0 478 62.1
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.2e-161 572.8 403 70.5
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.2e-161 572.8 390 70.8
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 7.1e-160 567.8 393 71.2
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 6.0e-159 564.7 423 67.8
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 6.7e-158 561.2 431 62.9
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.1e-157 560.5 427 67.7
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.6e-156 556.6 416 66.3
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 3.7e-156 555.4 426 67.6
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.3e-156 554.7 423 68.8
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 4.1e-155 552.0 422 63.3
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.0e-153 547.4 463 62.6
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 5.7e-149 531.6 390 67.4
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 5.3e-147 525.0 451 61.9
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.2e-146 523.9 342 73.4
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 1.0e-145 520.8 425 61.4
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 1.3e-145 520.4 415 64.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 4.7e-143 511.9 310 79.7
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 2.0e-141 506.5 338 70.7
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 4.4e-141 505.4 319 73.0
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 8.2e-140 501.1 428 62.1
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.1e-139 500.7 299 75.9
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 7.7e-138 494.6 302 76.8
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 5.0e-137 491.9 304 74.0
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 3.1e-131 472.6 336 69.9
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 3.5e-130 469.2 423 60.5
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.6e-127 460.3 436 59.4
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.2e-125 454.1 327 68.2
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.1e-123 447.6 420 57.4
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 2.2e-121 439.9 422 53.6
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.1e-120 437.6 435 51.0
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 6.3e-116 421.8 427 49.9
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.0e-114 416.8 410 51.7
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.7e-100 370.5 319 59.6
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 5.4e-99 365.5 279 65.6
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 9.5e-96 354.8 316 55.1
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.8e-93 344.7 301 58.5
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.1e-88 331.3 281 67.3
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.3e-73 281.2 183 65.0
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 3.6e-71 273.1 374 44.1
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 5.3e-70 269.2 452 37.8
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 5.4e-67 259.2 218 54.1
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.4e-61 240.0 129 93.0
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 2.8e-55 220.3 428 35.7
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 5.8e-53 212.6 555 30.3
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 4.3e-48 196.4 251 46.2
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.8e-46 191.0 119 79.0
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 2.4e-46 190.7 210 51.0
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 4.0e-46 189.9 127 69.3
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 3.5e-42 176.8 117 74.4
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 8.2e-31 139.0 124 63.7
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 7.9e-26 122.5 255 36.5
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.0e-25 120.6 145 49.7
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 2.6e-21 107.5 107 49.5
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.2e-18 98.6 60 73.3
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 6.8e-09 66.2 109 41.3
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.5e-08 65.1 72 54.2
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 5.7e-08 63.2 48 60.4


User provided reference genes

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