Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_28058 Corchorus olitorius HOM05D000009 ORTHO05D000008 7.5e-30 133.3 71 100.0
COL.COLO4_17450 Corchorus olitorius HOM05D000009 ORTHO05D000008 4.1e-20 100.9 67 82.1
COL.COLO4_17452 Corchorus olitorius HOM05D000009 ORTHO05D000008 1.2e-19 99.4 62 80.6
Duzib213G0765 Durio zibethinus HOM05D000009 ORTHO05D000008 6.0e-19 97.1 67 76.1
Thecc.07G138400 Theobroma cacao HOM05D000009 ORTHO05D000008 2.3e-18 95.1 67 76.1
Thecc.07G139100 Theobroma cacao HOM05D000009 ORTHO05D000008 2.1e-16 88.6 67 71.6
Thecc.07G139000 Theobroma cacao HOM05D000009 ORTHO05D000008 6.2e-16 87.0 67 70.1
Duzib128G1966 Durio zibethinus HOM05D000009 ORTHO05D000008 4.9e-13 77.4 64 64.1
Thecc.07G139300 Theobroma cacao HOM05D000009 ORTHO05D000008 6.4e-13 77.0 62 67.7
Thecc.10G151100 Theobroma cacao HOM05D000009 ORTHO05D000008 4.1e-12 74.3 62 62.9
COL.COLO4_20669 Corchorus olitorius HOM05D000009 ORTHO05D000008 5.4e-12 73.9 64 60.9
Thecc.10G152900 Theobroma cacao HOM05D000009 ORTHO05D000008 2.1e-11 72.0 68 58.8
Thecc.10G152500 Theobroma cacao HOM05D000009 ORTHO05D000008 4.6e-11 70.9 68 57.4
Manes.02G107000 Manihot esculenta HOM05D000009 ORTHO05D000008 7.8e-11 70.1 60 58.3
Thecc.10G156700 Theobroma cacao HOM05D000009 ORTHO05D000008 7.8e-11 70.1 62 59.7
Manes.06G013900 Manihot esculenta HOM05D000009 ORTHO05D000008 1.0e-10 69.7 68 55.9
Duzib114G0156 Durio zibethinus HOM05D000009 ORTHO05D000008 1.3e-10 69.3 62 61.3
Duzib114G0454 Durio zibethinus HOM05D000009 ORTHO05D000008 1.3e-10 69.3 62 62.9
QL04p012891 Quercus lobata HOM05D000009 ORTHO05D000008 3.0e-10 68.2 68 54.4
Duzib114G0972 Durio zibethinus HOM05D000009 ORTHO05D000008 3.9e-10 67.8 64 57.8
Duzib106G1785 Durio zibethinus HOM05D000009 ORTHO05D000008 6.6e-10 67.0 68 54.4
QL04p007189 Quercus lobata HOM05D000009 ORTHO05D000008 6.6e-10 67.0 60 53.3
Thecc.10G153100 Theobroma cacao HOM05D000009 ORTHO05D000008 6.6e-10 67.0 67 55.2
QL04p031187 Quercus lobata HOM05D000009 ORTHO05D000008 8.6e-10 66.6 60 56.7
Duzib114G0573 Durio zibethinus HOM05D000009 ORTHO05D000008 1.1e-09 66.2 68 54.4
Gohir.D05G283400 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.5e-09 65.9 58 53.4
Gorai.009G297900 Gossypium raimondii HOM05D000009 ORTHO05D000008 1.5e-09 65.9 58 53.4
QL04p007202 Quercus lobata HOM05D000009 ORTHO05D000008 1.5e-09 65.9 60 53.3
QL04p012983 Quercus lobata HOM05D000009 ORTHO05D000008 1.5e-09 65.9 60 58.3
Duzib106G0376 Durio zibethinus HOM05D000009 ORTHO05D000008 1.9e-09 65.5 61 55.7
Duzib114G0195 Durio zibethinus HOM05D000009 ORTHO05D000008 1.9e-09 65.5 70 54.3
QL04p012334 Quercus lobata HOM05D000009 ORTHO05D000008 1.9e-09 65.5 68 52.9
QL04p012950 Quercus lobata HOM05D000009 ORTHO05D000008 1.9e-09 65.5 68 52.9
QL93p2000_0058 Quercus lobata HOM05D000009 ORTHO05D000008 1.9e-09 65.5 68 52.9
Thecc.10G151400 Theobroma cacao HOM05D000009 ORTHO05D000008 2.5e-09 65.1 61 55.7
Atru.chr6.271 Acer truncatum HOM05D000009 ORTHO05D000008 3.3e-09 64.7 67 50.7
Gohir.A05G282200 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.3e-09 64.3 58 53.4
Ciclev10023669m.g Citrus clementina HOM05D000009 ORTHO05D000008 9.5e-09 63.2 64 56.2
COL.COLO4_20673 Corchorus olitorius HOM05D000009 ORTHO05D000008 9.5e-09 63.2 62 56.5
Duzib114G0683 Durio zibethinus HOM05D000009 ORTHO05D000008 9.5e-09 63.2 64 54.7
Duzib114G0890 Durio zibethinus HOM05D000009 ORTHO05D000008 9.5e-09 63.2 63 47.6
QL02p094858 Quercus lobata HOM05D000009 ORTHO05D000008 9.5e-09 63.2 68 48.5
QL02p094880 Quercus lobata HOM05D000009 ORTHO05D000008 9.5e-09 63.2 68 48.5
Thecc.01G405200 Theobroma cacao HOM05D000009 ORTHO05D000008 9.5e-09 63.2 62 54.8
Thecc.10G151200 Theobroma cacao HOM05D000009 ORTHO05D000008 9.5e-09 63.2 68 52.9
Thecc.10G152300 Theobroma cacao HOM05D000009 ORTHO05D000008 9.5e-09 63.2 62 53.2
Duzib114G0267 Durio zibethinus HOM05D000009 ORTHO05D000008 1.6e-08 62.4 68 55.9
Duzib114G0851 Durio zibethinus HOM05D000009 ORTHO05D000008 1.6e-08 62.4 61 50.8
QL02p094776 Quercus lobata HOM05D000009 ORTHO05D000008 1.6e-08 62.4 68 48.5
QL04p012310 Quercus lobata HOM05D000009 ORTHO05D000008 1.6e-08 62.4 58 56.9
Atru.chr6.262 Acer truncatum HOM05D000009 ORTHO05D000008 2.1e-08 62.0 59 52.5
Dinv13663 Davidia involucrata HOM05D000009 ORTHO05D000008 2.8e-08 61.6 59 54.2
Duzib106G1049 Durio zibethinus HOM05D000009 ORTHO05D000008 2.8e-08 61.6 61 54.1
Atru.chr6.197 Acer truncatum HOM05D000009 ORTHO05D000008 3.6e-08 61.2 60 48.3
Atru.chr6.201 Acer truncatum HOM05D000009 ORTHO05D000008 3.6e-08 61.2 67 49.3
Atru.chr6.268 Acer truncatum HOM05D000009 ORTHO05D000008 3.6e-08 61.2 60 50.0
Thecc.10G156900 Theobroma cacao HOM05D000009 ORTHO05D000008 4.7e-08 60.8 62 53.2
Duzib106G0940 Durio zibethinus HOM05D000009 ORTHO05D000008 6.2e-08 60.5 62 51.6
Ciclev10018510m.g Citrus clementina HOM05D000009 ORTHO05D000008 8.1e-08 60.1 59 50.8
Haze_03346 Corylus avellana HOM05D000009 ORTHO05D000008 8.1e-08 60.1 61 50.8
Dinv01859 Davidia involucrata HOM05D000009 ORTHO05D000008 8.1e-08 60.1 59 52.5
Duzib106G1007 Durio zibethinus HOM05D000009 ORTHO05D000008 8.1e-08 60.1 62 50.0
Potri.004G194800 Populus trichocarpa HOM05D000009 ORTHO05D000008 8.1e-08 60.1 60 55.0
COL.COLO4_17453 Corchorus olitorius HOM05D000009 ORTHO05D000008 1.1e-07 59.7 62 50.0
Gohir.A10G189400 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.1e-07 59.7 64 46.9
Gohir.D01G036400 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.1e-07 59.7 58 50.0
Gohir.D10G197251 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.1e-07 59.7 62 48.4
Hma1.2p1_1928F.1_g307860 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.1e-07 59.7 66 51.5
Rhsim07G0065800 Rhododendron simsii HOM05D000009 ORTHO05D000008 1.1e-07 59.7 61 50.8
RhsimUnG0036200 Rhododendron simsii HOM05D000009 ORTHO05D000008 1.1e-07 59.7 61 50.8
Thecc.07G137800 Theobroma cacao HOM05D000009 ORTHO05D000008 1.1e-07 59.7 63 54.0
Duzib213G1080 Durio zibethinus HOM05D000009 ORTHO05D000008 1.4e-07 59.3 62 54.8
Ciclev10010250m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.8e-07 58.9 59 55.9
Duzib106G1869 Durio zibethinus HOM05D000009 ORTHO05D000008 1.8e-07 58.9 62 51.6
Gorai.002G044600 Gossypium raimondii HOM05D000009 ORTHO05D000008 1.8e-07 58.9 58 50.0
Sabra04G0132700 Salix brachista HOM05D000009 ORTHO05D000008 1.8e-07 58.9 60 53.3
Thecc.10G155900 Theobroma cacao HOM05D000009 ORTHO05D000008 1.8e-07 58.9 68 45.6
Duzib106G1964 Durio zibethinus HOM05D000009 ORTHO05D000008 2.4e-07 58.5 62 50.0
QL04p012365 Quercus lobata HOM05D000009 ORTHO05D000008 2.4e-07 58.5 60 53.3
QL04p083795 Quercus lobata HOM05D000009 ORTHO05D000008 2.4e-07 58.5 59 50.8
Actinidia06234 Actinidia chinensis HOM05D000009 ORTHO05D000008 3.1e-07 58.2 59 49.2
QL04p022001 Quercus lobata HOM05D000009 ORTHO05D000008 3.1e-07 58.2 60 53.3
Rhsim06G0066400 Rhododendron simsii HOM05D000009 ORTHO05D000008 3.1e-07 58.2 66 43.9
GSVIVG01010700001 Vitis vinifera HOM05D000009 ORTHO05D000008 3.1e-07 58.2 60 51.7
Dinv01858 Davidia involucrata HOM05D000009 ORTHO05D000008 4.0e-07 57.8 59 50.8
Dinv01861 Davidia involucrata HOM05D000009 ORTHO05D000008 4.0e-07 57.8 59 50.8
Manes.14G165300 Manihot esculenta HOM05D000009 ORTHO05D000008 4.0e-07 57.8 68 44.1
Actinidia15943 Actinidia chinensis HOM05D000009 ORTHO05D000008 5.2e-07 57.4 68 47.1
Ciclev10024530m.g Citrus clementina HOM05D000009 ORTHO05D000008 5.2e-07 57.4 64 53.1
Gohir.D11G327000 Gossypium hirsutum HOM05D000009 ORTHO05D000008 5.2e-07 57.4 62 50.0
Gorai.007G357700 Gossypium raimondii HOM05D000009 ORTHO05D000008 5.2e-07 57.4 62 50.0
Manes.17G072100 Manihot esculenta HOM05D000009 ORTHO05D000008 5.2e-07 57.4 59 50.8
TWI56G0178 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 5.2e-07 57.4 62 48.4
vmacro22866 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 5.2e-07 57.4 61 47.5
vmacro22980 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 5.2e-07 57.4 61 47.5
COL.COLO4_04659 Corchorus olitorius HOM05D007678 ORTHO05D009658 6.8e-07 57.0 62 45.2
Gorai.009G368700 Gossypium raimondii HOM05D000009 ORTHO05D000008 6.8e-07 57.0 62 48.4
Thecc.10G152800 Theobroma cacao HOM05D000009 ORTHO05D000008 6.8e-07 57.0 62 50.0
vmacro14072 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 6.8e-07 57.0 59 47.5
Atru.chr1.1286 Acer truncatum HOM05D000009 ORTHO05D000008 8.9e-07 56.6 68 42.6
Duzib138G0052 Durio zibethinus HOM05D000009 ORTHO05D000008 8.9e-07 56.6 59 47.5
QL02p094947 Quercus lobata HOM05D000009 ORTHO05D000008 8.9e-07 56.6 59 47.5
Gohir.A11G312884 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.2e-06 56.2 62 48.4
Rhsim07G0069600 Rhododendron simsii HOM05D000009 ORTHO05D000008 1.2e-06 56.2 62 48.4
Thecc.10G152200 Theobroma cacao HOM05D000009 ORTHO05D000008 1.2e-06 56.2 62 50.0
Thecc.10G153400 Theobroma cacao HOM05D000009 ORTHO05D000008 1.2e-06 56.2 62 50.0
GSVIVG01032210001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.2e-06 56.2 60 45.0
Gohir.A04G040800 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.5e-06 55.8 62 46.8
Phvul.007G086300 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.5e-06 55.8 63 50.8
GSVIVG01000639001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.5e-06 55.8 68 48.5
GSVIVG01013533001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.5e-06 55.8 68 48.5
Actinidia06254 Actinidia chinensis HOM05D000009 ORTHO05D000008 2.0e-06 55.5 60 45.0
Cfa010448 Carpinus fangiana HOM05D000682 ORTHO05D000510 2.0e-06 55.5 56 51.8
CiPaw.16G094800 Carya illinoinensis HOM05D000009 ORTHO05D000008 2.0e-06 55.5 57 50.9
Gorai.011G220700 Gossypium raimondii HOM05D000009 ORTHO05D000008 2.0e-06 55.5 62 45.2
Manes.07G010500 Manihot esculenta HOM05D000009 ORTHO05D000008 2.0e-06 55.5 62 43.5
RhsimUnG0036000 Rhododendron simsii HOM05D000009 ORTHO05D000008 2.0e-06 55.5 62 48.4
TWI15G0849 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 2.0e-06 55.5 62 43.5
Gohir.D11G329700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 2.6e-06 55.1 62 48.4
Manes.10G133713 Manihot esculenta HOM05D000009 ORTHO05D000008 2.6e-06 55.1 67 49.3
RcHm_v2.0_Chr5g0041691 Rosa chinensis HOM05D000009 ORTHO05D000008 2.6e-06 55.1 57 52.6
GSVIVG01036610001 Vitis vinifera HOM05D000009 ORTHO05D000008 2.6e-06 55.1 59 49.2
Actinidia06250 Actinidia chinensis HOM05D000009 ORTHO05D000008 3.4e-06 54.7 56 48.2
Ciclev10004188m.g Citrus clementina HOM05D000009 ORTHO05D000008 3.4e-06 54.7 57 50.9
Duzib138G1349 Durio zibethinus HOM05D000009 ORTHO05D000008 3.4e-06 54.7 59 45.8
CSS0039571 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 4.4e-06 54.3 59 45.8
Ciclev10018509m.g Citrus clementina HOM05D000009 ORTHO05D000008 4.4e-06 54.3 64 50.0
Ciclev10023613m.g Citrus clementina HOM05D000009 ORTHO05D000008 4.4e-06 54.3 64 50.0
Duzib106G0364 Durio zibethinus HOM05D000009 ORTHO05D000008 4.4e-06 54.3 67 46.3
Gohir.D11G330000 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.4e-06 54.3 62 46.8
Gohir.D11G330700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.4e-06 54.3 62 46.8
Manes.10G112000 Manihot esculenta HOM05D000009 ORTHO05D000008 4.4e-06 54.3 68 45.6
Manes.10G134200 Manihot esculenta HOM05D000009 ORTHO05D000008 4.4e-06 54.3 52 55.8
Rhsim07G0070300 Rhododendron simsii HOM05D000009 ORTHO05D000008 4.4e-06 54.3 66 39.4
Rhsim07G0110200 Rhododendron simsii HOM05D000009 ORTHO05D000008 4.4e-06 54.3 66 43.9
RhsimUnG0035900 Rhododendron simsii HOM05D000009 ORTHO05D000008 4.4e-06 54.3 61 42.6
CiPaw.16G069700 Carya illinoinensis HOM05D000009 ORTHO05D000008 5.8e-06 53.9 56 53.6
Ciclev10023260m.g Citrus clementina HOM05D000009 ORTHO05D000008 5.8e-06 53.9 61 47.5
Gohir.A11G313100 Gossypium hirsutum HOM05D000009 ORTHO05D000008 5.8e-06 53.9 62 45.2
Gohir.D11G330300 Gossypium hirsutum HOM05D000009 ORTHO05D000008 5.8e-06 53.9 62 46.8
Gorai.007G361300 Gossypium raimondii HOM05D000009 ORTHO05D000008 5.8e-06 53.9 62 46.8
Gorai.N007000 Gossypium raimondii HOM05D000009 ORTHO05D000008 5.8e-06 53.9 60 48.3
Potri.001G261600 Populus trichocarpa HOM05D000009 ORTHO05D000008 5.8e-06 53.9 70 51.4
QL01p034828 Quercus lobata HOM05D000009 ORTHO05D000008 5.8e-06 53.9 64 50.0
QL02p049451 Quercus lobata HOM05D000009 ORTHO05D000008 5.8e-06 53.9 64 50.0
Thecc.01G405400 Theobroma cacao HOM05D000009 ORTHO05D000008 5.8e-06 53.9 62 48.4
CSS0002460 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 7.6e-06 53.5 59 45.8
CAN.G1619.2 Capsicum annuum HOM05D000009 ORTHO05D000008 7.6e-06 53.5 59 47.5
Ciclev10003496m.g Citrus clementina HOM05D000009 ORTHO05D000008 7.6e-06 53.5 68 45.6
Ciclev10018504m.g Citrus clementina HOM05D000009 ORTHO05D000008 7.6e-06 53.5 65 46.2
COL.COLO4_24602 Corchorus olitorius HOM05D000009 ORTHO05D000008 7.6e-06 53.5 63 47.6
Gohir.A11G310400 Gossypium hirsutum HOM05D000009 ORTHO05D000008 7.6e-06 53.5 62 45.2
Gohir.D11G330200 Gossypium hirsutum HOM05D000009 ORTHO05D000008 7.6e-06 53.5 63 49.2
Gorai.007G331000 Gossypium raimondii HOM05D000009 ORTHO05D000008 7.6e-06 53.5 62 45.2
Gorai.007G361100 Gossypium raimondii HOM05D000009 ORTHO05D000008 7.6e-06 53.5 63 49.2
Hma1.2p1_0301F.1_g118280 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 7.6e-06 53.5 64 40.6
PGR004G0296 Punica granatum HOM05D000009 ORTHO05D000008 7.6e-06 53.5 57 52.6
Rhsim07G0070900 Rhododendron simsii HOM05D000009 ORTHO05D000008 7.6e-06 53.5 61 42.6
GSVIVG01036614001 Vitis vinifera HOM05D000009 ORTHO05D000008 7.6e-06 53.5 60 46.7
CiPaw.16G069600 Carya illinoinensis HOM05D000009 ORTHO05D000008 9.9e-06 53.1 56 51.8
Ciclev10018507m.g Citrus clementina HOM05D000009 ORTHO05D000008 9.9e-06 53.1 64 48.4
Ciclev10024454m.g Citrus clementina HOM05D000009 ORTHO05D000008 9.9e-06 53.1 64 50.0
COL.COLO4_12333 Corchorus olitorius HOM05D000009 ORTHO05D021049 9.9e-06 53.1 60 41.7
Duzib213G1094 Durio zibethinus HOM05D000009 ORTHO05D000008 9.9e-06 53.1 62 50.0
Gohir.A11G312926 Gossypium hirsutum HOM05D000009 ORTHO05D000008 9.9e-06 53.1 62 46.8
Gohir.D11G303700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 9.9e-06 53.1 62 45.2
Gohir.D11G329800 Gossypium hirsutum HOM05D000009 ORTHO05D000008 9.9e-06 53.1 63 49.2
Gohir.D11G330100 Gossypium hirsutum HOM05D000009 ORTHO05D000008 9.9e-06 53.1 62 46.8
Gorai.007G357500 Gossypium raimondii HOM05D000009 ORTHO05D000008 9.9e-06 53.1 61 49.2
Gorai.007G357800 Gossypium raimondii HOM05D000009 ORTHO05D000008 9.9e-06 53.1 62 46.8
Nitab4.5_0001244g0100 Nicotiana tabacum HOM05D000009 ORTHO05D000008 9.9e-06 53.1 59 45.8
Phvul.010G063000 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 9.9e-06 53.1 63 47.6
RhsimUnG0237500 Rhododendron simsii HOM05D000009 ORTHO05D000008 9.9e-06 53.1 66 39.4
vmacro13809 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 9.9e-06 53.1 59 45.8


User provided reference genes

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