Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 0.0e+00 1236.5 671 100.0
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 4.6e-278 961.1 694 76.4
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 5.2e-274 947.6 692 74.4
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.3e-256 889.8 694 71.9
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.1e-255 886.7 692 71.8
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 9.6e-252 873.6 683 72.2
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 8.4e-248 860.5 688 70.8
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.4e-247 859.8 680 71.3
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.8e-242 842.8 693 68.3
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 7.4e-228 794.3 680 66.2
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.6e-222 776.5 680 65.3
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 9.4e-199 697.6 718 57.0
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 7.5e-196 688.0 714 55.9
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.6e-193 680.2 708 56.8
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 8.6e-192 674.5 715 55.7
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.0e-188 663.3 710 55.2
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 4.9e-187 658.7 715 55.2
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.3e-184 649.8 711 55.8
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 6.4e-179 631.7 717 55.0
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 4.1e-178 629.0 644 57.6
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 8.6e-176 621.3 691 53.7
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 1.5e-175 620.5 717 53.6
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 1.2e-174 617.5 770 51.6
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.1e-173 614.4 688 53.1
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 5.2e-173 612.1 711 53.7
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 2.0e-172 610.1 714 51.8
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 4.1e-170 602.4 705 52.1
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 7.0e-170 601.7 730 53.2
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 2.5e-167 593.2 711 50.5
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.6e-166 590.5 706 51.3
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 3.6e-166 589.3 711 52.6
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 4.0e-165 585.9 713 51.9
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 3.2e-162 576.2 694 50.4
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 3.2e-162 576.2 717 50.8
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 1.6e-161 573.9 695 51.5
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.0e-160 571.2 711 52.0
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 5.1e-160 568.9 712 51.8
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 3.4e-156 556.2 714 49.4
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.4e-156 555.8 724 50.4
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 9.9e-156 554.7 706 50.0
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 8.4e-155 551.6 711 50.9
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 5.4e-154 548.9 711 50.5
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 2.3e-152 543.5 708 49.0
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 5.1e-152 542.3 621 54.6
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 5.1e-152 542.3 703 49.4
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 1.4e-149 534.3 716 47.9
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 1.8e-149 533.9 702 49.1
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.8e-149 533.9 606 55.0
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 6.4e-147 525.4 716 46.8
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.4e-147 525.0 718 50.1
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 1.9e-146 523.9 826 45.0
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.4e-146 523.5 708 50.7
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 3.2e-146 523.1 722 47.9
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.5e-145 519.6 709 48.9
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 7.8e-145 518.5 727 47.2
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.3e-144 517.7 713 48.8
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 5.1e-144 515.8 705 47.8
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.3e-143 513.1 711 49.2
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 3.3e-143 513.1 724 47.4
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 9.0e-141 505.0 708 46.9
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 2.6e-140 503.4 807 42.9
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 1.7e-139 500.7 704 46.9
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 2.2e-139 500.4 716 45.4
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 2.9e-139 500.0 701 47.4
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.9e-138 497.3 704 46.7
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 4.6e-137 492.7 481 60.9
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 3.9e-136 489.6 710 46.9
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 1.9e-135 487.3 722 46.4
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.3e-135 486.5 780 42.7
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 6.2e-134 482.3 644 48.9
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 6.2e-134 482.3 783 42.8
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 7.6e-132 475.3 551 56.4
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 1.8e-128 464.2 721 44.4
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 3.0e-128 463.4 715 44.2
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.5e-127 460.3 731 43.9
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 4.3e-127 459.5 711 44.9
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 5.6e-127 459.1 710 44.8
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 2.1e-126 457.2 741 43.0
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 3.1e-125 453.4 721 45.5
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 2.0e-124 450.7 730 41.9
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 3.8e-123 446.4 706 42.9
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.9e-122 444.1 709 42.9
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 3.2e-122 443.4 711 44.3
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 4.2e-122 443.0 711 44.3
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 9.3e-122 441.8 699 42.2
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.6e-121 441.0 725 44.8
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 1.6e-121 441.0 706 43.2
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 1.0e-120 438.3 729 45.1
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.9e-120 436.4 714 42.4
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 1.3e-118 431.4 712 45.1
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 2.8e-118 430.3 696 42.8
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.1e-117 426.8 731 41.5
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.2e-116 424.9 710 43.1
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 1.5e-116 424.5 780 40.1
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 2.6e-116 423.7 704 43.3
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 1.9e-114 417.5 634 43.7
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 5.5e-114 416.0 703 43.2
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 2.3e-112 410.6 702 40.7
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.1e-111 408.3 706 42.6
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.0e-107 395.2 666 40.8
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 1.3e-107 394.8 707 41.7
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 1.7e-107 394.4 762 40.3
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 2.9e-107 393.7 699 41.1
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.5e-106 390.6 780 35.5
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.1e-105 387.5 643 42.3
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 7.9e-105 385.6 682 42.5
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.0e-103 380.9 692 40.6
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 4.4e-103 379.8 788 38.8
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 1.3e-102 378.3 675 42.5
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 2.2e-102 377.5 711 41.9
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 2.4e-101 374.0 736 40.1
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 2.9e-99 367.1 686 41.7
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 1.1e-98 365.2 713 36.7
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 2.3e-96 357.5 674 39.3
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 6.7e-96 355.9 687 40.8
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 1.1e-95 355.1 686 40.5
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 7.4e-95 352.4 636 38.2
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 1.3e-94 351.7 677 39.6
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 2.2e-94 350.9 690 39.9
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 2.8e-94 350.5 680 39.7
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 1.1e-93 348.6 678 40.1
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 3.5e-92 343.6 676 40.4
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.5e-90 337.4 586 41.1
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 5.5e-90 336.3 676 39.8
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 2.1e-89 334.3 678 38.6
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 2.7e-89 334.0 706 37.8
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 6.1e-89 332.8 674 38.1
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.3e-88 330.9 296 61.5
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 3.0e-88 330.5 719 35.7
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 5.2e-88 329.7 693 38.4
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.0e-87 327.8 697 36.7
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 3.8e-83 313.5 658 38.0
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 6.5e-83 312.8 426 46.0
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 4.2e-82 310.1 675 37.5
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.4e-80 305.1 721 35.0
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.7e-78 298.1 704 35.1
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.3e-78 296.2 259 65.6
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.5e-76 290.4 276 59.8
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.6e-73 281.6 709 32.9
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 9.2e-69 265.8 863 29.8
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.9e-67 260.8 311 49.5
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 9.5e-66 255.8 407 41.5
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 4.0e-64 250.4 497 39.0
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 5.2e-64 250.0 445 41.3
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 2.9e-62 244.2 350 48.3
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 5.0e-59 233.4 593 34.4
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 1.9e-58 231.5 580 34.1
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 8.0e-57 226.1 628 32.8
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.4e-56 225.3 359 39.8
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 1.4e-56 225.3 303 45.9
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 1.2e-55 222.2 216 57.9
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 2.7e-52 211.1 663 30.2
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 5.6e-50 203.4 142 73.9
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 4.9e-46 190.3 597 28.0
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 7.1e-45 186.4 708 30.4
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.6e-44 185.3 264 40.5
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.3e-43 182.2 179 60.3
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 3.0e-43 181.0 460 37.4
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 2.9e-38 164.5 441 33.8
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 7.1e-37 159.8 184 48.4
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.3e-30 139.0 98 73.5
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 2.2e-30 138.3 120 70.8
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.1e-29 136.0 139 56.1
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 2.5e-26 124.8 162 46.3
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 5.4e-21 107.1 461 29.7
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 1.8e-19 102.1 370 26.8
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 3.7e-17 94.4 167 38.9
Rhsim05G0045800 Rhododendron simsii HOM05D003626 ORTHO05D004255 6.9e-16 90.1 349 29.2
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 3.4e-15 87.8 99 50.5
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.7e-14 85.5 256 27.0
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 8.4e-14 83.2 67 68.7
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.5e-13 81.6 67 58.2
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.2e-13 80.9 108 42.6
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.5e-13 80.5 55 74.5
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 9.6e-10 69.7 66 50.0
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.2e-09 67.0 98 42.9
HPP92_027487 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.3e-06 59.3 56 64.3
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.2e-06 58.5 59 52.5
FAN06G0571 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.0e-06 57.4 90 38.9


User provided reference genes

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