Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_27611 Corchorus olitorius HOM05D005814 ORTHO05D006821 5.0e-244 847.4 451 100.0
Thecc.02G307500 Theobroma cacao HOM05D005814 ORTHO05D006821 1.9e-171 606.3 470 74.0
Duzib251G0248 Durio zibethinus HOM05D005814 ORTHO05D006821 8.1e-170 600.9 456 73.9
Gohir.D12G157900 Gossypium hirsutum HOM05D005814 ORTHO05D006821 8.4e-159 564.3 479 68.5
Gorai.008G170700 Gossypium raimondii HOM05D005814 ORTHO05D006821 1.2e-157 560.5 479 68.1
Gohir.A12G154700 Gossypium hirsutum HOM05D005814 ORTHO05D006821 2.3e-156 556.2 479 67.4
Cpa.g.sc2.165 Carica papaya HOM05D005814 ORTHO05D006821 8.8e-100 368.2 493 51.1
Ciclev10017889m.g Citrus clementina HOM05D005814 ORTHO05D006821 5.2e-92 342.4 458 53.5
CiPaw.06G055200 Carya illinoinensis HOM05D005814 ORTHO05D006821 2.3e-87 327.0 505 46.1
Manes.17G085800 Manihot esculenta HOM05D005814 ORTHO05D006821 1.9e-86 323.9 479 46.6
Cfa015048 Carpinus fangiana HOM05D005814 ORTHO05D006821 3.0e-84 316.6 481 47.0
MD13G1018000 Malus domestica HOM05D005814 ORTHO05D006821 1.5e-83 314.3 466 48.5
Dinv26373 Davidia involucrata HOM05D005814 ORTHO05D006821 2.9e-79 300.1 505 44.0
Prupe.1G335600 Prunus persica HOM05D005814 ORTHO05D006821 2.9e-79 300.1 471 45.9
CSS0022543 Camellia sinensis var. sinensis HOM05D005814 ORTHO05D006821 4.3e-78 296.2 465 45.4
Atru.chr11.820 Acer truncatum HOM05D005814 ORTHO05D006821 7.3e-78 295.4 458 46.9
RcHm_v2.0_Chr4g0442421 Rosa chinensis HOM05D005814 ORTHO05D006821 8.0e-77 292.0 471 45.0
Hma1.2p1_0234F.1_g098410 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 5.2e-76 289.3 484 43.2
TWI74G1321 Tripterygium wilfordii HOM05D005814 ORTHO05D006821 4.4e-75 286.2 447 45.2
Haze_10846 Corylus avellana HOM05D005814 ORTHO05D006821 1.7e-74 284.3 482 42.9
GSVIVG01011625001 Vitis vinifera HOM05D005814 ORTHO05D006821 2.9e-74 283.5 456 45.4
FvH4_4g33270 Fragaria vesca HOM05D005814 ORTHO05D006821 4.9e-74 282.7 477 43.8
FAN17G1112 Fragaria x ananassa HOM05D005814 ORTHO05D006821 4.9e-74 282.7 490 43.7
Aa31LG1G340 Aethionema arabicum HOM05D005814 ORTHO05D006821 1.9e-73 280.8 483 44.5
Solyc04g008070.3 Solanum lycopersicum HOM05D005814 ORTHO05D006821 2.4e-73 280.4 461 44.9
FAN12G4059 Fragaria x ananassa HOM05D005814 ORTHO05D006821 3.2e-73 280.0 477 43.6
QL03p038226 Quercus lobata HOM05D005814 ORTHO05D006821 3.2e-73 280.0 494 43.7
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 9.2e-73 278.5 463 45.1
FAN22G0411 Fragaria x ananassa HOM05D005814 ORTHO05D006821 2.0e-72 277.3 482 42.7
Carub.0001s1454 Capsella rubella HOM05D005814 ORTHO05D006821 2.7e-72 276.9 464 44.8
Potri.010G103800 Populus trichocarpa HOM05D005814 ORTHO05D006821 4.6e-72 276.2 454 45.8
TAR629G0065 Trochodendron aralioides HOM05D005814 ORTHO05D006821 1.0e-71 275.0 541 39.9
Sopen04g003220 Solanum pennellii HOM05D005814 ORTHO05D006821 1.3e-71 274.6 459 44.4
CARHR015280 Cardamine hirsuta HOM05D005814 ORTHO05D006821 7.3e-70 268.9 467 43.9
Actinidia22431 Actinidia chinensis HOM05D005814 ORTHO05D006821 2.8e-69 266.9 440 44.3
Lj2g0010004 Lotus japonicus HOM05D005814 ORTHO05D006821 2.0e-67 260.8 470 42.6
ClCG07G005440 Citrullus lanatus HOM05D005814 ORTHO05D006821 3.4e-67 260.0 464 41.6
Lj6A734T81 Lonicera japonica HOM05D005814 ORTHO05D006821 1.3e-66 258.1 464 43.1
FAN07G0145 Fragaria x ananassa HOM05D005814 ORTHO05D006821 3.7e-66 256.5 458 42.8
Sed0025695 Sechium edule HOM05D005814 ORTHO05D006821 2.4e-65 253.8 497 41.4
Ca_13003_v3 Cicer arietinum L. HOM05D005814 ORTHO05D006821 2.7e-64 250.4 475 41.9
Cc11_g06580 Coffea canephora HOM05D005814 ORTHO05D006821 3.5e-64 250.0 434 44.7
Oeu006299.1 Olea europaea HOM05D005814 ORTHO05D006821 1.0e-63 248.4 440 43.4
AT1G14750 Arabidopsis thaliana HOM05D005814 ORTHO05D006821 3.9e-63 246.5 462 43.5
BcaB02g06546 Brassica carinata HOM05D005814 ORTHO05D006821 1.1e-62 245.0 443 42.9
Nitab4.5_0007364g0010 Nicotiana tabacum HOM05D005814 ORTHO05D006821 6.2e-61 239.2 453 39.1
CAN.G74.21 Capsicum annuum HOM05D005814 ORTHO05D006821 1.4e-60 238.0 541 35.5
Nn4g24463 Nelumbo nucifera HOM05D005814 ORTHO05D006821 1.8e-60 237.7 527 36.8
MELO3C016674.2 Cucumis melo HOM05D005814 ORTHO05D006821 2.3e-60 237.3 472 40.3
AL1G26770 Arabidopsis lyrata HOM05D005814 ORTHO05D006821 3.1e-60 236.9 466 42.5
A08p31820 Brassica napus HOM05D005814 ORTHO05D006821 4.4e-59 233.0 462 41.8
BraA08t35104Z Brassica rapa HOM05D005814 ORTHO05D006821 4.4e-59 233.0 462 41.8
BcaC07g38760 Brassica carinata HOM05D005814 ORTHO05D006821 1.9e-57 227.6 458 41.5
C08p16910 Brassica napus HOM05D005814 ORTHO05D006821 1.9e-57 227.6 458 41.5
BolC8t49318H Brassica oleracea HOM05D005814 ORTHO05D006821 1.9e-57 227.6 458 41.5
Sp1g13190 Schrenkiella parvula HOM05D005814 ORTHO05D006821 3.2e-57 226.9 465 39.6
CsaV3_5G014510 Cucumis sativus L. HOM05D005814 ORTHO05D006821 5.4e-57 226.1 472 38.6
VMungo1215G3061 Vigna mungo HOM05D005814 ORTHO05D006821 7.1e-57 225.7 484 38.4
Aqoxy3G04061 Aquilegia oxysepala HOM05D005814 ORTHO05D006821 9.2e-57 225.3 484 37.0
Phvul.003G016100 Phaseolus vulgaris HOM05D005814 ORTHO05D006821 2.1e-56 224.2 479 39.0
Sed0028047 Sechium edule HOM05D005814 ORTHO05D006821 4.6e-56 223.0 459 39.4
Psat6g051160 Pisum sativum HOM05D005814 ORTHO05D006821 6.0e-56 222.6 454 38.8
A06p10800 Brassica napus HOM05D005814 ORTHO05D006821 1.0e-55 221.9 441 39.9
Medtr1g032850 Medicago truncatula HOM05D005814 ORTHO05D006821 8.6e-55 218.8 466 40.1
THA.LOC104805940 Tarenaya hassleriana HOM05D005814 ORTHO05D006821 4.3e-54 216.5 466 40.1
Aa31LG2G8110 Aethionema arabicum HOM05D005814 ORTHO05D006821 1.6e-53 214.5 487 39.2
SalBow2G2494 Salvia bowleyana HOM05D005814 ORTHO05D006821 2.8e-53 213.8 456 39.7
SGA_v2.0_scaffold23G10169 Striga asiatica HOM05D005814 ORTHO05D006821 2.8e-53 213.8 484 38.2
Migut.E00496 Erythranthe guttata HOM05D005814 ORTHO05D006821 1.4e-52 211.5 451 37.9
BolC5t30013H Brassica oleracea HOM05D005814 ORTHO05D006821 3.1e-52 210.3 472 38.8
Glyma.02G086500 Glycine max HOM05D005814 ORTHO05D006821 3.1e-52 210.3 516 37.6
HanXRQChr17g0566001 Helianthus annuus HOM05D005814 ORTHO05D006821 1.2e-51 208.4 517 35.8
C05p12700 Brassica napus HOM05D005814 ORTHO05D006821 2.6e-51 207.2 472 38.3
Nitab4.5_0012105g0040 Nicotiana tabacum HOM05D005814 ORTHO05D006821 4.9e-50 203.0 577 33.1
Peaxi162Scf00337g00625 Petunia axillaris HOM05D005814 ORTHO05D006821 4.9e-50 203.0 184 59.8
Lsat_1_v5_gn_4_23401 Lactuca sativa HOM05D005814 ORTHO05D006821 8.4e-50 202.2 494 37.9
BraA06t24258Z Brassica rapa HOM05D005814 ORTHO05D006821 1.4e-49 201.4 475 37.9
Sc16g0008510 Simmondsia chinensis HOM05D005814 ORTHO05D006821 1.9e-49 201.1 456 37.7
Nitab4.5_0003884g0090 Nicotiana tabacum HOM05D005814 ORTHO05D006821 4.2e-49 199.9 576 32.6
BcaB03g13082 Brassica carinata HOM05D005814 ORTHO05D006821 7.8e-48 195.7 456 37.9
Eucgr.B02694 Eucalyptus grandis HOM05D005814 ORTHO05D006821 7.8e-48 195.7 473 37.4
AUR62005164 Chenopodium quinoa HOM05D005814 ORTHO05D006821 2.5e-46 190.7 477 35.6
Thhalv10009486m.g Eutrema salsugineum HOM05D005814 ORTHO05D006821 9.6e-46 188.7 453 36.9
ECA234G1246 Erigeron canadensis HOM05D005814 ORTHO05D006821 8.1e-45 185.7 503 34.6
BolC8t52099H Brassica oleracea HOM05D005814 ORTHO05D006821 5.3e-44 183.0 455 36.3
DCAR_023563 Daucus carota HOM05D005814 ORTHO05D006821 5.3e-44 183.0 461 36.2
C08p45460 Brassica napus HOM05D005814 ORTHO05D006821 1.5e-43 181.4 455 36.5
PSO782G2706 Papaver somniferum HOM05D005814 ORTHO05D006821 2.6e-43 180.6 483 33.1
EL10Ac4g09401 Beta vulgaris HOM05D005814 ORTHO05D006821 3.4e-43 180.3 350 39.4
BcaC07g41541 Brassica carinata HOM05D005814 ORTHO05D006821 3.4e-43 180.3 455 36.3
PGR004G2344 Punica granatum HOM05D005814 ORTHO05D006821 1.7e-42 177.9 445 36.2
BraA09t41550Z Brassica rapa HOM05D005814 ORTHO05D006821 4.9e-42 176.4 455 36.5
SHI04346 Sapria himalayana HOM05D005814 ORTHO05D006821 6.4e-42 176.0 546 32.6
Ah.04g160370 Amaranthus hybridus HOM05D005814 ORTHO05D006821 1.4e-41 174.9 463 35.0
Lalb_Chr10g0095591 Lupinus albus HOM05D005814 ORTHO05D006821 1.4e-41 174.9 434 38.7
A09p61820 Brassica napus HOM05D005814 ORTHO05D006821 2.1e-40 171.0 322 39.4
PSO478G0479 Papaver somniferum HOM05D005814 ORTHO05D006821 3.0e-39 167.2 483 32.7
arahy.Tifrunner.gnm1.ann1.UBK9I9 Arachis hypogaea HOM05D005814 ORTHO05D006821 2.5e-38 164.1 409 39.4
HanXRQChr16g0527251 Helianthus annuus HOM05D005814 ORTHO05D006821 5.6e-38 162.9 440 35.7
arahy.Tifrunner.gnm1.ann1.FUL2U5 Arachis hypogaea HOM05D005814 ORTHO05D006821 9.6e-38 162.2 409 39.1
PSO782G1915 Papaver somniferum HOM05D005814 ORTHO05D006821 2.8e-37 160.6 495 31.9
Ah.06g189510 Amaranthus hybridus HOM05D005814 ORTHO05D006821 6.2e-37 159.5 456 34.4
HPP92_002293 Vanilla planifolia HOM05D005814 ORTHO05D006821 4.5e-35 153.3 452 32.5
TPR.G6435 Trifolium pratense HOM05D005814 ORTHO05D006821 1.0e-31 142.1 105 66.7
Zm00001eb009270 Zea mays HOM05D005814 ORTHO05D006821 4.2e-25 120.2 216 39.4
ATR0021G040 Amborella trichopoda HOM05D005814 ORTHO05D006821 1.6e-24 118.2 383 30.5
Zm00001eb399650 Zea mays HOM05D005814 ORTHO05D006821 3.0e-23 114.0 238 37.4
Os03g0225200 Oryza sativa ssp. japonica HOM05D005814 ORTHO05D006821 6.7e-23 112.8 219 38.4
AUR62000804 Chenopodium quinoa HOM05D005814 ORTHO05D006821 7.4e-22 109.4 392 31.4
unitig_27.g25164 Utricularia gibba HOM05D005814 ORTHO05D006821 5.0e-18 96.7 442 30.8
Sp6g13180 Schrenkiella parvula HOM05D005814 ORTHO05D006821 2.8e-13 80.9 119 47.9
Ca_13001_v3 Cicer arietinum L. HOM05D005814 ORTHO05D006821 1.4e-12 78.6 52 71.2
Lalb_Chr10g0095581 Lupinus albus HOM05D005814 ORTHO05D006821 2.4e-12 77.8 52 69.2
unitig_29.g31882 Utricularia gibba HOM05D005814 ORTHO05D006821 6.9e-12 76.3 209 36.4
C08p26480 Brassica napus HOM05D049943 ORTHO05D040231 1.1e-09 68.9 85 47.1
Hma1.2p1_1845F.1_g305150 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 1.9e-09 68.2 45 71.1
CDE11G1165 Ceratophyllum demersum HOM05D055633 ORTHO05D006821 7.2e-09 66.2 382 26.4
Hma1.2p1_1172F.1_g263560 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 9.4e-09 65.9 45 68.9
Hma1.2p1_1786F.1_g302390 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 9.4e-09 65.9 45 68.9
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.8e-07 61.6 101 33.7
FAN12G4197 Fragaria x ananassa HOM05D005814 ORTHO05D006821 1.8e-07 61.6 60 58.3
CSS0026107 Camellia sinensis var. sinensis HOM05D000552 ORTHO05D000469 4.3e-06 57.0 96 34.4
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 4.3e-06 57.0 92 33.7
HanXRQChr07g0191441 Helianthus annuus HOM05D000552 ORTHO05D000469 5.7e-06 56.6 96 32.3
PRCOL_00004901 Prasinoderma coloniale HOM05D000552 ORTHO05D000469 5.7e-06 56.6 100 35.0


User provided reference genes

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