Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 1.9e-46 188.7 91 100.0
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 7.2e-17 90.5 46 89.1
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 1.8e-15 85.9 46 84.8
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 1.8e-15 85.9 46 84.8
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 3.9e-15 84.7 46 80.4
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.1e-14 83.2 46 84.8
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.1e-14 83.2 46 84.8
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.1e-14 83.2 46 84.8
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 4.3e-14 81.3 45 82.2
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 5.7e-14 80.9 46 80.4
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 7.4e-14 80.5 45 77.8
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 9.7e-14 80.1 46 78.3
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 1.3e-13 79.7 46 76.1
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 1.3e-13 79.7 46 76.1
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 1.3e-13 79.7 46 80.4
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.3e-13 79.7 46 76.1
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 1.7e-13 79.3 45 75.6
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 1.7e-13 79.3 45 80.0
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 1.7e-13 79.3 45 80.0
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 1.7e-13 79.3 45 80.0
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 1.7e-13 79.3 45 80.0
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 2.2e-13 79.0 46 76.1
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 2.2e-13 79.0 45 77.8
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 2.8e-13 78.6 45 77.8
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 3.7e-13 78.2 45 75.6
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 4.8e-13 77.8 46 76.1
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 4.8e-13 77.8 45 77.8
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 8.2e-13 77.0 45 73.3
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 8.2e-13 77.0 46 76.1
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 8.2e-13 77.0 45 73.3
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 8.2e-13 77.0 46 71.7
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 8.2e-13 77.0 45 75.6
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 8.2e-13 77.0 45 77.8
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 1.4e-12 76.3 45 73.3
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 1.4e-12 76.3 45 73.3
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 1.4e-12 76.3 46 73.9
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 1.4e-12 76.3 44 75.0
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.8e-12 75.9 45 73.3
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.8e-12 75.9 45 73.3
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 2.4e-12 75.5 46 73.9
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 3.1e-12 75.1 45 71.1
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 3.1e-12 75.1 45 71.1
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 3.1e-12 75.1 45 75.6
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 4.1e-12 74.7 46 69.6
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 4.1e-12 74.7 46 73.9
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 5.3e-12 74.3 45 71.1
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 5.3e-12 74.3 46 73.9
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 6.9e-12 73.9 45 75.6
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 6.9e-12 73.9 44 72.7
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 6.9e-12 73.9 46 71.7
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 9.1e-12 73.6 45 71.1
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 1.2e-11 73.2 46 71.7
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 1.2e-11 73.2 46 69.6
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 1.5e-11 72.8 45 71.1
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 1.5e-11 72.8 44 72.7
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 1.5e-11 72.8 44 72.7
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 1.5e-11 72.8 45 71.1
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.5e-11 72.8 46 67.4
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.5e-11 72.8 46 67.4
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.5e-11 72.8 45 71.1
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.5e-11 72.8 46 69.6
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 2.0e-11 72.4 45 66.7
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 2.0e-11 72.4 45 73.3
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 2.6e-11 72.0 45 66.7
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 2.6e-11 72.0 45 68.9
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 2.6e-11 72.0 45 71.1
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 2.6e-11 72.0 45 71.1
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 2.6e-11 72.0 45 71.1
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 3.4e-11 71.6 46 71.7
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 4.5e-11 71.2 46 73.9
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 4.5e-11 71.2 44 68.2
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 5.9e-11 70.9 45 64.4
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 5.9e-11 70.9 45 68.9
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 7.7e-11 70.5 46 69.6
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 1.0e-10 70.1 45 68.9
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 1.0e-10 70.1 45 68.9
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.3e-10 69.7 45 62.2
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.7e-10 69.3 45 68.9
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 1.7e-10 69.3 45 68.9
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 1.7e-10 69.3 43 74.4
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 2.2e-10 68.9 45 64.4
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 2.2e-10 68.9 45 62.2
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 2.2e-10 68.9 46 67.4
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.2e-10 68.9 46 67.4
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.2e-10 68.9 46 67.4
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.9e-10 68.6 45 68.9
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 2.9e-10 68.6 46 63.0
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.8e-10 68.2 45 68.9
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 3.8e-10 68.2 45 71.1
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 3.8e-10 68.2 45 68.9
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 3.8e-10 68.2 45 71.1
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 5.0e-10 67.8 46 63.0
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 5.0e-10 67.8 46 71.7
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 5.0e-10 67.8 45 60.0
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 5.0e-10 67.8 45 60.0
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 5.0e-10 67.8 46 65.2
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 5.0e-10 67.8 45 68.9
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 6.5e-10 67.4 46 63.0
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 6.5e-10 67.4 44 61.4
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 6.5e-10 67.4 44 65.9
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 8.5e-10 67.0 44 65.9
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 1.1e-09 66.6 45 64.4
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.1e-09 66.6 46 65.2
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 1.1e-09 66.6 44 63.6
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.4e-09 66.2 45 60.0
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 3.2e-09 65.1 45 66.7
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 5.5e-09 64.3 44 61.4
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 7.2e-09 63.9 46 60.9
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 7.2e-09 63.9 46 65.2
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 4.7e-08 61.2 45 60.0
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 6.1e-08 60.8 38 73.7
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 6.1e-08 60.8 38 73.7
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 6.1e-08 60.8 45 57.8
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 6.1e-08 60.8 45 57.8
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 3.3e-06 55.1 45 55.6
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 3.3e-06 55.1 45 55.6
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 3.3e-06 55.1 45 55.6
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 4.4e-06 54.7 45 51.1
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 4.4e-06 54.7 42 54.8
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 7.4e-06 53.9 45 53.3
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 9.7e-06 53.5 34 67.6


User provided reference genes

Program Settings