Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 2.4e-111 405.6 215 100.0
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 2.6e-94 349.0 211 89.1
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 1.8e-90 336.3 221 85.1
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 3.9e-90 335.1 221 84.6
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 4.7e-83 311.6 196 88.3
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 5.2e-82 308.1 223 78.9
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 3.3e-81 305.4 201 82.6
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 1.4e-79 300.1 220 75.9
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 5.9e-78 294.7 209 77.0
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 2.2e-77 292.7 222 76.1
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 3.8e-77 292.0 201 78.1
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.6e-75 286.6 214 73.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.4e-74 283.5 212 72.6
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.0e-74 282.3 213 73.2
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 8.8e-74 280.8 213 72.8
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 3.4e-73 278.9 218 72.9
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 2.8e-72 275.8 199 75.4
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 4.8e-72 275.0 199 75.9
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 6.3e-72 274.6 211 73.5
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.1e-71 273.9 224 69.2
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.4e-71 273.5 205 72.7
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.2e-70 270.4 224 71.0
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 2.7e-70 269.2 212 71.2
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 2.7e-70 269.2 226 69.9
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 3.5e-70 268.9 190 74.7
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 4.5e-70 268.5 199 75.9
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 4.5e-70 268.5 209 71.8
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 5.9e-70 268.1 200 76.0
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 3.8e-69 265.4 199 71.9
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 5.0e-69 265.0 224 67.0
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 8.5e-69 264.2 208 68.3
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 1.5e-68 263.5 178 78.7
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.9e-68 263.1 191 75.4
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 2.5e-68 262.7 199 74.4
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 4.2e-68 261.9 156 89.7
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 5.5e-68 261.5 210 69.0
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 5.5e-68 261.5 212 67.9
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 7.2e-68 261.2 156 89.7
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 7.2e-68 261.2 213 70.0
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 2.1e-67 259.6 199 70.4
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 2.7e-67 259.2 216 64.4
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 4.7e-67 258.5 212 69.3
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 6.1e-67 258.1 207 69.6
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 1.4e-66 256.9 199 71.4
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.8e-66 256.5 208 65.9
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 4.0e-66 255.4 179 78.2
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 5.2e-66 255.0 225 63.6
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 6.8e-66 254.6 212 68.4
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 6.8e-66 254.6 213 68.5
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 2.6e-65 252.7 202 71.8
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 4.4e-65 251.9 218 67.0
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 5.7e-65 251.5 204 66.7
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.7e-64 250.0 213 66.2
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.7e-64 248.8 181 75.7
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 4.9e-64 248.4 195 67.7
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.9e-64 248.4 220 64.5
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.4e-63 246.9 212 67.9
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.1e-63 245.4 216 67.6
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 5.4e-63 245.0 216 65.3
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 7.0e-63 244.6 210 66.7
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 7.0e-63 244.6 198 64.6
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 9.2e-63 244.2 247 60.3
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 2.0e-62 243.0 211 65.4
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 2.0e-62 243.0 215 66.5
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 2.0e-62 243.0 209 63.2
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 2.7e-62 242.7 210 65.2
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 3.5e-62 242.3 209 66.5
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 3.5e-62 242.3 149 83.2
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 3.5e-62 242.3 210 63.8
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 3.5e-62 242.3 179 73.7
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 5.9e-62 241.5 219 64.4
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 5.9e-62 241.5 143 86.0
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 7.7e-62 241.1 199 66.3
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 7.7e-62 241.1 199 68.3
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 1.0e-61 240.7 204 67.2
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 1.0e-61 240.7 212 64.6
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 1.0e-61 240.7 212 64.6
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.7e-61 240.0 216 65.3
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.7e-61 240.0 223 61.9
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 2.3e-61 239.6 203 66.5
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 5.0e-61 238.4 211 65.4
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 5.0e-61 238.4 213 64.8
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 6.6e-61 238.0 211 65.4
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 6.6e-61 238.0 205 63.9
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.5e-60 236.9 198 67.2
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.5e-60 236.9 177 71.8
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.9e-60 236.5 208 65.9
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.5e-60 236.1 215 64.2
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 4.3e-60 235.3 228 57.5
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 5.6e-60 235.0 210 62.9
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 7.3e-60 234.6 202 67.8
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.2e-59 233.8 176 71.6
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 4.7e-59 231.9 214 62.1
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 6.1e-59 231.5 213 63.4
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 8.0e-59 231.1 214 60.7
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.0e-58 230.7 213 63.4
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.0e-58 230.7 204 67.6
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 3.0e-58 229.2 213 62.9
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 8.9e-58 227.6 196 63.8
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 1.2e-57 227.3 220 61.8
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 2.0e-57 226.5 187 68.4
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 4.4e-57 225.3 217 61.8
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 4.4e-57 225.3 217 61.8
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 7.5e-57 224.6 186 67.7
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 1.3e-56 223.8 206 60.7
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.4e-55 220.3 178 68.0
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 1.8e-55 219.9 157 74.5
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 2.4e-55 219.5 207 59.9
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 1.2e-54 217.2 180 67.2
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.2e-54 217.2 143 75.5
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.0e-54 216.5 181 68.5
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 2.7e-54 216.1 204 64.2
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.0e-53 214.2 204 63.7
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.3e-53 213.8 161 72.7
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 6.6e-53 211.5 204 62.7
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.2e-51 207.2 200 61.5
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 3.6e-51 205.7 141 76.6
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 6.8e-50 201.4 190 61.6
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 2.4e-47 193.0 128 75.0
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.9e-44 183.3 194 56.7
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.3e-42 176.4 129 70.5
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 6.8e-42 174.9 133 65.4
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 4.4e-41 172.2 199 54.3
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 7.5e-41 171.4 132 68.2
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.7e-40 170.2 135 66.7
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.9e-39 166.8 145 63.4
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.6e-38 163.7 212 53.8
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 4.0e-34 149.1 131 62.6
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 3.2e-31 139.4 143 55.2
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 2.7e-30 136.3 144 56.2
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.6e-30 135.6 207 44.4
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.9e-28 130.2 132 59.8
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.3e-24 117.5 75 81.3
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 5.1e-21 105.5 70 74.3
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 5.1e-21 105.5 70 74.3
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.6e-17 93.2 68 73.5
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.3e-16 90.9 69 71.0
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 8.1e-11 71.6 136 37.5
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 4.0e-10 69.3 45 77.8


User provided reference genes

Program Settings