Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_26713 Corchorus olitorius HOM05D006508 ORTHO05D003378 7.9e-28 126.3 61 100.0
COL.COLO4_26712 Corchorus olitorius HOM05D006508 ORTHO05D003378 6.9e-24 113.2 60 90.0
COL.COLO4_26721 Corchorus olitorius HOM05D006508 ORTHO05D003378 6.1e-20 100.1 54 83.3
COL.COLO4_03647 Corchorus olitorius HOM05D006508 ORTHO05D003378 1.5e-18 95.5 54 81.5
COL.COLO4_26711 Corchorus olitorius HOM05D006508 ORTHO05D003378 1.5e-18 95.5 54 81.5
COL.COLO4_26709 Corchorus olitorius HOM05D006508 ORTHO05D003378 3.3e-18 94.4 53 83.0
Thecc.04G124500 Theobroma cacao HOM05D000275 ORTHO05D003378 4.8e-17 90.5 59 69.5
Thecc.06G230300 Theobroma cacao HOM05D000275 ORTHO05D003378 1.2e-12 75.9 59 57.6
Gohir.A09G067950 Gossypium hirsutum HOM05D006508 ORTHO05D003378 2.1e-12 75.1 57 57.9
Gohir.D09G067950 Gossypium hirsutum HOM05D000275 ORTHO05D003378 2.1e-12 75.1 57 57.9
Thecc.06G230500 Theobroma cacao HOM05D000275 ORTHO05D003378 2.3e-11 71.6 53 58.5
Gohir.D07G080100 Gossypium hirsutum HOM05D000275 ORTHO05D003378 6.7e-11 70.1 59 52.5
Gohir.A07G075700 Gossypium hirsutum HOM05D006508 ORTHO05D003378 1.1e-10 69.3 58 53.4
Gohir.A07G075600 Gossypium hirsutum HOM05D000275 ORTHO05D003378 1.5e-10 68.9 59 50.8
Gorai.001G085000 Gossypium raimondii HOM05D000275 ORTHO05D003378 2.0e-10 68.6 59 50.8
Ciclev10018268m.g Citrus clementina HOM05D000275 ORTHO05D003378 2.6e-10 68.2 59 52.5
Thecc.06G230400 Theobroma cacao HOM05D006508 ORTHO05D003378 2.8e-09 64.7 59 52.5
Thecc.06G230600 Theobroma cacao HOM05D006508 ORTHO05D003378 3.7e-09 64.3 59 52.5
TWI38G1893 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 3.7e-09 64.3 59 47.5
Gorai.001G085100 Gossypium raimondii HOM05D006508 ORTHO05D003378 8.2e-09 63.2 58 51.7
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 1.1e-08 62.8 56 44.6
Manes.12G052802 Manihot esculenta HOM05D006508 ORTHO05D003378 1.8e-08 62.0 57 50.9
Prupe.4G217000 Prunus persica HOM05D000275 ORTHO05D003378 3.1e-08 61.2 60 46.7
TWI38G2037 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 3.1e-08 61.2 59 45.8
FAN21G0761 Fragaria x ananassa HOM05D000275 ORTHO05D003378 4.1e-08 60.8 54 51.9
FAN21G1243 Fragaria x ananassa HOM05D000275 ORTHO05D003378 4.1e-08 60.8 54 51.9
Prupe.4G013200 Prunus persica HOM05D000275 ORTHO05D003378 4.1e-08 60.8 54 50.0
TPR.G16537 Trifolium pratense HOM05D006508 ORTHO05D003378 1.2e-07 59.3 60 45.0
TPR.G25278 Trifolium pratense HOM05D006508 ORTHO05D003378 1.2e-07 59.3 60 45.0
CiPaw.10G075800 Carya illinoinensis HOM05D006508 ORTHO05D003378 2.0e-07 58.5 56 50.0
TPR.G25293 Trifolium pratense HOM05D006508 ORTHO05D003378 2.6e-07 58.2 61 45.9
FvH4_3g01190 Fragaria vesca HOM05D000275 ORTHO05D003378 3.4e-07 57.8 54 50.0
Manes.12G053200 Manihot esculenta HOM05D006508 ORTHO05D003378 3.4e-07 57.8 57 47.4
TPR.G10946 Trifolium pratense HOM05D006508 ORTHO05D003378 3.4e-07 57.8 61 44.3
TWI38G1593 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 3.4e-07 57.8 57 40.4
Gorai.001G085200 Gossypium raimondii HOM05D006508 ORTHO05D003378 4.5e-07 57.4 55 49.1
Gohir.D07G080133 Gossypium hirsutum HOM05D006508 ORTHO05D003378 5.9e-07 57.0 58 48.3
Manes.13G059000 Manihot esculenta HOM05D000275 ORTHO05D003378 5.9e-07 57.0 59 42.4
Psat0s5273g0040 Pisum sativum HOM05D006508 ORTHO05D003378 7.7e-07 56.6 61 45.9
Psat6g066360 Pisum sativum HOM05D006508 ORTHO05D003378 7.7e-07 56.6 61 45.9
TPR.G39085 Trifolium pratense HOM05D006508 ORTHO05D003378 7.7e-07 56.6 61 45.9
MD10G1328900 Malus domestica HOM05D000275 ORTHO05D003378 1.0e-06 56.2 54 46.3
RcHm_v2.0_Chr5g0075671 Rosa chinensis HOM05D006508 ORTHO05D003378 1.0e-06 56.2 54 51.9
FAN25G2169 Fragaria x ananassa HOM05D006508 ORTHO05D003378 1.3e-06 55.8 44 59.1
TWI38G0468 Tripterygium wilfordii HOM05D000275 ORTHO05D003378 1.3e-06 55.8 57 43.9
Migut.M01349 Erythranthe guttata HOM05D000275 ORTHO05D003378 1.7e-06 55.5 60 36.7
Migut.M01356 Erythranthe guttata HOM05D000275 ORTHO05D003378 1.7e-06 55.5 60 36.7
RcHm_v2.0_Chr5g0047311 Rosa chinensis HOM05D006508 ORTHO05D003378 2.2e-06 55.1 54 48.1
Aa31LG5G22760 Aethionema arabicum HOM05D000275 ORTHO05D003378 2.9e-06 54.7 59 44.1
CiPaw.09G100900 Carya illinoinensis HOM05D006508 ORTHO05D003378 2.9e-06 54.7 56 42.9
Medtr3g056640 Medicago truncatula HOM05D006508 ORTHO05D003378 2.9e-06 54.7 60 43.3
Medtr3g464110 Medicago truncatula HOM05D000275 ORTHO05D003378 2.9e-06 54.7 60 43.3
Medtr0071s0070 Medicago truncatula HOM05D006508 ORTHO05D003378 3.8e-06 54.3 60 41.7
Medtr3g046590 Medicago truncatula HOM05D006508 ORTHO05D003378 3.8e-06 54.3 60 41.7
TPR.G25291 Trifolium pratense HOM05D000275 ORTHO05D003378 3.8e-06 54.3 60 41.7
TPR.G13489 Trifolium pratense HOM05D006508 ORTHO05D003378 5.0e-06 53.9 61 41.0
Gohir.D07G080166 Gossypium hirsutum HOM05D006508 ORTHO05D003378 6.5e-06 53.5 55 47.3
TPR.G4368 Trifolium pratense HOM05D006508 ORTHO05D003378 6.5e-06 53.5 61 41.0
CiPaw.09G101100 Carya illinoinensis HOM05D006508 ORTHO05D003378 8.5e-06 53.1 58 43.1
Duzib235G0034 Durio zibethinus HOM05D006508 ORTHO05D003378 8.5e-06 53.1 48 52.1
Medtr3g046515 Medicago truncatula HOM05D006508 ORTHO05D003378 8.5e-06 53.1 60 41.7
Medtr3g046530 Medicago truncatula HOM05D006508 ORTHO05D003378 8.5e-06 53.1 60 41.7
Medtr3g046540 Medicago truncatula HOM05D006508 ORTHO05D003378 8.5e-06 53.1 60 41.7
QL04p068109 Quercus lobata HOM05D006508 ORTHO05D003378 8.5e-06 53.1 59 37.3


User provided reference genes

Program Settings