Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.4e-136 488.8 246 100.0
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 4.3e-117 424.9 232 90.5
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.4e-112 409.8 233 88.0
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.9e-112 409.5 228 89.0
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 5.1e-110 401.4 229 87.8
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 5.7e-109 397.9 228 87.7
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 4.1e-107 391.7 231 81.8
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 4.1e-107 391.7 231 81.8
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 4.1e-107 391.7 217 89.9
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 7.2e-104 380.9 232 80.6
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.0e-102 377.1 232 79.3
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 2.3e-102 375.9 229 81.2
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 5.1e-102 374.8 227 80.2
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 2.5e-101 372.5 228 78.9
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 9.7e-101 370.5 231 77.9
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.7e-100 369.8 231 78.4
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 2.2e-100 369.4 231 80.5
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 3.7e-100 368.6 228 76.8
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 3.1e-99 365.5 232 76.7
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 6.9e-99 364.4 228 77.6
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 9.1e-99 364.0 229 78.6
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 9.1e-99 364.0 231 76.2
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 2.6e-98 362.5 229 77.7
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 7.7e-98 360.9 232 77.6
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 2.9e-97 359.0 225 80.0
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 1.4e-96 356.7 229 77.3
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 1.4e-96 356.7 228 75.4
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 2.5e-96 355.9 231 76.2
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 7.2e-96 354.4 227 76.7
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 1.2e-95 353.6 231 75.8
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 3.6e-95 352.1 226 74.8
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 3.6e-95 352.1 225 75.6
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 4.7e-95 351.7 224 75.4
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 6.1e-95 351.3 229 77.3
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 7.9e-95 350.9 217 78.8
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 3.0e-94 349.0 225 74.2
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 3.0e-94 349.0 232 73.7
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 8.8e-94 347.4 228 75.0
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 1.1e-93 347.1 228 73.7
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 1.1e-93 347.1 229 76.4
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 2.0e-93 346.3 231 74.0
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 2.0e-93 346.3 231 73.6
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 3.3e-93 345.5 231 75.3
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 4.4e-93 345.1 231 74.0
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.3e-92 343.6 243 71.2
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 1.7e-92 343.2 226 73.5
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 1.7e-92 343.2 226 73.5
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 2.2e-92 342.8 225 74.7
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 4.8e-92 341.7 228 72.8
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 4.8e-92 341.7 217 76.0
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 6.3e-92 341.3 266 65.0
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 1.4e-91 340.1 231 71.9
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 1.8e-91 339.7 217 76.5
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 3.1e-91 339.0 231 72.3
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 5.3e-91 338.2 217 75.1
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 9.1e-91 337.4 216 77.8
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 1.2e-90 337.0 230 69.6
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 1.6e-90 336.7 230 70.4
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 2.0e-90 336.3 219 77.2
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 3.5e-90 335.5 231 70.6
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 5.9e-90 334.7 228 71.1
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 5.9e-90 334.7 230 69.6
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 7.7e-90 334.3 228 71.1
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.0e-89 334.0 225 69.3
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.7e-89 333.2 231 71.0
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 2.2e-89 332.8 227 69.2
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 1.9e-88 329.7 228 69.7
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.6e-87 326.6 230 68.3
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.6e-87 326.6 215 76.3
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 2.1e-87 326.2 228 70.6
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 2.7e-87 325.9 231 69.3
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.6e-87 325.5 231 68.8
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 6.1e-87 324.7 216 74.5
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 6.1e-87 324.7 228 68.4
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 8.0e-87 324.3 230 68.3
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.8e-86 323.2 203 78.3
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 2.3e-86 322.8 230 68.7
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 3.0e-86 322.4 230 68.3
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 3.0e-86 322.4 206 76.2
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 4.0e-86 322.0 230 68.3
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 5.2e-86 321.6 230 68.3
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.1e-85 320.5 227 67.4
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 9.7e-85 317.4 230 67.8
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 1.3e-84 317.0 227 67.0
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 3.7e-84 315.5 227 67.8
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 2.4e-83 312.8 242 65.3
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 4.1e-83 312.0 236 66.5
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 5.3e-83 311.6 227 64.8
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 1.6e-82 310.1 236 64.8
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 5.9e-82 308.1 230 67.0
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 7.7e-82 307.8 264 59.1
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.7e-81 306.6 273 57.5
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 5.0e-81 305.1 227 68.3
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 4.7e-79 298.5 188 77.1
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 3.4e-77 292.4 190 75.3
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 9.8e-77 290.8 306 53.3
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 2.2e-73 279.6 348 45.4
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 1.1e-72 277.3 257 59.1
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 3.0e-70 269.2 229 60.7
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 3.0e-70 269.2 220 60.5
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 2.0e-69 266.5 193 67.4
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 2.8e-68 262.7 193 68.4
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 7.0e-67 258.1 227 54.2
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.3e-65 253.1 176 71.6
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 2.1e-63 246.5 224 54.0
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 2.8e-63 246.1 226 54.4
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 8.0e-63 244.6 175 68.0
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 5.0e-57 225.3 224 54.0
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 3.1e-54 216.1 142 78.2
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 3.1e-54 216.1 215 49.3
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 2.0e-50 203.4 143 70.6
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 2.7e-50 203.0 250 42.8
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.5e-48 197.2 151 62.3
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 8.1e-47 191.4 144 64.6
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.6e-45 186.4 130 69.2
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 5.8e-45 185.3 221 44.3
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.3e-44 184.1 227 45.8
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 8.3e-44 181.4 233 43.3
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 1.9e-40 170.2 119 69.7
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 1.7e-36 157.1 203 43.3
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 4.7e-31 139.0 163 47.2
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 1.3e-25 120.9 79 72.2
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 2.4e-19 100.1 79 59.5
Lsat_1_v5_gn_9_32780 Lactuca sativa HOM05D000379 ORTHO05D024309 6.9e-06 55.5 45 55.6
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 6.9e-06 55.5 36 75.0


User provided reference genes

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