Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 616 100.0
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 2.5e-291 1005.0 528 91.3
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 4.2e-286 987.6 512 92.6
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 9.3e-286 986.5 528 89.8
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 2.3e-284 981.9 528 89.4
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 2.8e-282 974.9 534 87.6
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 8.2e-282 973.4 534 87.6
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.5e-280 969.1 534 87.3
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 1.5e-280 969.1 529 88.5
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 2.6e-280 968.4 529 88.5
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 4.5e-280 967.6 529 88.3
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.6e-272 941.8 534 84.6
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 1.0e-271 939.9 512 88.1
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 3.8e-271 937.9 518 86.7
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 7.2e-270 933.7 520 86.7
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 1.6e-269 932.6 533 84.2
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 2.1e-269 932.2 518 86.1
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 2.1e-269 932.2 528 85.0
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 2.1e-269 932.2 528 84.8
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 4.7e-269 931.0 518 86.3
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 6.1e-269 930.6 528 84.7
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 7.9e-269 930.2 503 88.5
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 3.0e-268 928.3 517 86.1
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 3.0e-268 928.3 517 86.1
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 3.0e-268 928.3 512 86.9
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 1.5e-267 926.0 533 83.9
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.0e-267 925.6 512 85.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 3.3e-267 924.9 532 84.6
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 4.4e-267 924.5 512 87.3
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 5.7e-267 924.1 532 84.4
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 7.4e-267 923.7 524 85.1
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 2.8e-266 921.8 532 84.4
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.8e-265 919.1 517 85.3
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 2.4e-265 918.7 532 84.0
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 2.4e-265 918.7 524 84.7
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 7.0e-265 917.1 524 85.5
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 1.5e-264 916.0 514 86.6
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 2.6e-264 915.2 519 84.8
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 4.5e-264 914.4 512 85.5
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 7.7e-264 913.7 528 83.5
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 1.5e-262 909.4 512 85.4
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 3.2e-262 908.3 531 83.6
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 5.5e-262 907.5 512 84.4
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 7.2e-262 907.1 520 83.5
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 7.2e-262 907.1 518 84.2
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 1.6e-261 906.0 518 85.1
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 1.6e-261 906.0 520 83.8
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 2.7e-261 905.2 534 83.5
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 8.0e-261 903.7 516 84.7
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 1.0e-260 903.3 522 83.1
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 1.8e-260 902.5 522 83.1
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 3.0e-260 901.7 525 82.5
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 3.0e-260 901.7 524 83.6
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 4.0e-260 901.4 522 83.1
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 2.6e-259 898.7 514 85.2
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 5.7e-259 897.5 518 83.2
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 7.5e-259 897.1 512 84.6
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 9.7e-259 896.7 550 80.7
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 9.7e-259 896.7 517 83.8
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.3e-258 896.3 512 84.8
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 2.2e-258 895.6 516 83.3
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 2.2e-258 895.6 518 83.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 3.7e-258 894.8 516 83.1
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 4.8e-258 894.4 511 83.6
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 8.2e-258 893.6 525 82.9
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 1.4e-257 892.9 529 83.0
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 1.4e-257 892.9 518 83.6
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 1.8e-257 892.5 513 83.4
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 3.1e-257 891.7 525 81.5
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 3.1e-257 891.7 533 81.6
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 4.1e-257 891.3 512 83.6
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 5.3e-257 891.0 529 80.9
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 1.6e-256 889.4 521 82.9
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 1.6e-256 889.4 526 81.6
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 2.0e-256 889.0 518 82.4
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 2.6e-256 888.6 518 82.6
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 4.5e-256 887.9 518 82.2
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 4.5e-256 887.9 518 82.2
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 5.9e-256 887.5 518 82.8
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 1.0e-255 886.7 512 82.6
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 1.3e-255 886.3 518 81.3
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 1.7e-255 885.9 517 83.2
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 2.9e-255 885.2 519 82.5
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 3.8e-255 884.8 529 81.7
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 1.1e-254 883.2 525 81.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 3.2e-254 881.7 518 81.5
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 9.4e-254 880.2 525 81.1
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 1.2e-253 879.8 519 82.5
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 2.7e-253 878.6 527 80.1
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 8.0e-253 877.1 507 83.2
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 1.8e-252 875.9 518 82.0
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 3.0e-252 875.2 536 80.4
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 5.2e-252 874.4 483 85.9
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 1.5e-251 872.8 535 80.4
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 1.5e-251 872.8 535 80.4
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 1.5e-251 872.8 535 80.4
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 1.5e-251 872.8 527 82.4
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 2.0e-251 872.5 525 79.6
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 3.4e-251 871.7 514 82.3
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 5.7e-251 870.9 527 79.7
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 7.5e-251 870.5 532 80.3
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 2.8e-250 868.6 517 80.9
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 6.3e-250 867.5 518 81.7
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 6.3e-250 867.5 518 80.1
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 8.3e-250 867.1 515 81.4
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 8.3e-250 867.1 529 79.8
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 9.1e-249 863.6 514 80.9
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 9.1e-249 863.6 514 81.5
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 1.2e-248 863.2 507 81.5
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 1.6e-248 862.8 517 81.2
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 2.0e-248 862.4 521 81.0
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 4.5e-248 861.3 531 79.8
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 5.9e-248 860.9 518 80.5
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 5.9e-248 860.9 525 78.5
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 5.9e-248 860.9 525 80.0
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 5.9e-248 860.9 525 80.0
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 5.9e-248 860.9 525 80.0
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 5.9e-248 860.9 525 80.0
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 2.2e-247 859.0 486 84.2
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 2.9e-247 858.6 527 81.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 6.5e-247 857.4 521 80.2
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 5.5e-246 854.4 518 79.7
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 7.2e-246 854.0 544 76.8
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 6.1e-245 850.9 514 81.1
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 6.1e-245 850.9 514 81.1
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 3.0e-244 848.6 518 80.3
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 4.4e-243 844.7 521 79.1
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 5.7e-243 844.3 518 78.6
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 4.5e-240 834.7 518 78.8
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 1.3e-234 816.6 529 76.4
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 2.9e-234 815.5 523 76.9
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 2.7e-232 808.9 556 74.5
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 3.0e-231 805.4 556 73.4
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 5.6e-230 801.2 520 76.5
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 1.5e-227 793.1 518 73.0
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.9e-225 786.2 512 74.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 1.0e-223 780.4 493 76.3
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 1.7e-223 779.6 578 68.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 6.6e-223 777.7 525 75.4
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.8e-221 772.3 534 71.2
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 4.0e-220 768.5 516 71.9
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 4.9e-218 761.5 518 73.9
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 1.0e-215 753.8 521 74.1
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 1.1e-214 750.4 551 70.1
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 4.0e-212 741.9 393 89.1
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 7.1e-209 731.1 428 83.6
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 5.5e-153 545.4 463 60.7
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.3e-143 513.5 512 55.7
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 9.1e-140 501.5 301 81.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.2e-129 466.5 235 93.2
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.9e-106 389.8 252 75.8
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.6e-104 384.4 282 68.8
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.8e-99 365.5 394 54.3
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.3e-68 262.3 131 96.9
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 4.2e-60 236.9 156 77.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 1.1e-44 185.7 163 57.7
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.5e-28 132.1 100 63.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.5e-25 122.1 96 66.7
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 7.5e-25 119.8 404 29.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.0e-21 109.4 256 31.2
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.0e-21 109.4 339 27.4
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.6e-17 94.7 49 89.8
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.5e-17 93.2 332 28.0
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-16 91.7 220 32.3
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 4.8e-16 90.5 134 41.8
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-16 89.7 217 29.5
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.5e-14 84.3 48 81.2
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.5e-14 84.3 365 25.5
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.3e-10 71.6 39 84.6
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-08 63.5 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.8e-07 62.0 38 78.9


User provided reference genes

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