Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1285.4 643 100.0
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1208.7 641 88.9
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1206.8 641 88.8
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1204.5 633 90.5
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1201.4 641 88.8
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1132.5 641 83.2
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1127.1 639 85.6
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1125.5 639 82.2
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1123.6 639 81.5
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1113.2 640 82.0
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1113.2 639 80.9
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1112.4 641 80.2
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1112.1 641 80.2
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1111.7 687 77.4
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1110.1 641 80.8
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1107.8 640 80.5
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1106.7 640 80.3
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1095.9 639 79.8
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1095.5 635 82.0
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1095.1 641 79.4
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1094.7 641 79.3
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1094.7 641 79.3
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1094.3 641 79.4
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1094.0 639 79.2
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1092.8 641 79.3
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1092.0 639 79.0
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1092.0 640 79.1
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1091.6 724 72.0
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1089.7 641 79.1
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1087.0 640 78.1
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1086.6 641 78.8
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1082.8 642 78.2
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1081.2 644 79.5
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1080.5 641 77.8
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1079.3 676 74.6
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1076.6 656 77.0
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1076.2 639 76.5
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1075.5 638 78.5
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1075.5 640 78.1
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 4.4e-312 1073.5 638 77.7
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 4.4e-312 1073.5 641 78.3
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 1.3e-311 1072.4 646 76.5
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 1.8e-311 1072.0 640 78.8
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 4.0e-311 1070.8 644 78.0
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 6.6e-311 1070.1 640 76.6
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 8.8e-311 1069.7 641 76.3
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 1.1e-310 1069.3 641 76.3
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 1.5e-310 1068.9 641 76.1
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 3.3e-310 1067.8 631 78.6
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 5.7e-310 1067.0 641 83.2
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 7.4e-310 1066.6 645 80.0
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 9.7e-310 1066.2 641 76.4
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 6.9e-308 1060.1 637 76.0
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 1.2e-307 1059.3 642 77.7
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 2.9e-306 1054.7 640 76.2
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 6.5e-306 1053.5 633 77.4
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 3.6e-304 1047.7 639 77.2
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 4.7e-304 1047.3 640 75.9
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 1.0e-303 1046.2 660 74.4
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 1.8e-303 1045.4 604 80.1
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 2.3e-303 1045.0 637 76.3
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 3.0e-303 1044.6 659 73.1
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 5.1e-303 1043.9 641 73.9
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 9.7e-302 1039.6 796 65.3
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 4.8e-301 1037.3 632 75.3
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 1.4e-300 1035.8 588 81.5
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 2.0e-299 1031.9 634 75.6
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 2.5e-297 1025.0 640 74.2
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 4.7e-296 1020.8 615 76.9
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 8.0e-296 1020.0 639 74.0
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.8e-295 1018.8 638 73.0
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 2.3e-295 1018.5 639 73.1
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 4.4e-294 1014.2 639 73.1
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 5.7e-294 1013.8 639 73.1
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 5.7e-294 1013.8 642 72.7
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 9.7e-294 1013.1 636 73.6
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 4.8e-293 1010.7 593 78.6
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 6.3e-293 1010.4 641 71.9
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 1.8e-292 1008.8 639 72.9
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 4.1e-292 1007.7 792 62.4
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.6e-291 1005.0 639 72.9
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 1.3e-290 1002.7 639 72.8
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 1.3e-290 1002.7 639 72.8
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 1.3e-290 1002.7 639 72.8
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 8.8e-287 989.9 638 72.1
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 3.5e-283 978.0 639 71.5
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 1.5e-281 972.6 575 79.7
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 4.4e-278 961.1 639 69.0
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 3.7e-269 931.4 544 78.3
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 6.6e-266 920.6 632 71.4
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 8.9e-263 910.2 575 76.5
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 2.0e-259 899.0 561 73.1
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 5.0e-258 894.4 593 69.1
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 7.3e-241 837.4 641 60.7
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 9.3e-236 820.5 641 60.7
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 9.0e-231 803.9 641 59.1
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 5.6e-217 758.1 514 71.2
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 9.4e-188 661.0 365 86.0
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 1.5e-180 637.1 366 77.0
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 4.0e-170 602.4 374 75.9
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 7.7e-166 588.2 373 73.5
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 5.0e-165 585.5 544 54.6
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 2.0e-129 467.2 533 46.7
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.2e-105 388.3 241 71.0
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 4.8e-83 313.2 742 31.8
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 4.1e-74 283.5 245 57.6
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 3.8e-64 250.4 154 74.0
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 1.0e-61 242.3 200 61.5
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.6e-25 122.1 70 72.9
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 7.8e-25 119.8 65 81.5
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 8.6e-24 116.3 71 69.0
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 8.1e-22 109.8 70 67.1
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 6.8e-21 106.7 90 62.2
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 1.1e-18 99.4 66 72.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 1.1e-18 99.4 66 72.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 1.1e-18 99.4 66 72.7
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 3.2e-18 97.8 64 67.2
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 5.4e-18 97.1 83 57.8
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 1.3e-16 92.4 110 45.5
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.9e-15 88.6 52 69.2
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 3.3e-15 87.8 90 51.1
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.3e-15 87.4 72 59.7
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 1.4e-10 72.4 99 45.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 1.0e-08 66.2 69 47.8
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 1.5e-07 62.4 64 48.4


User provided reference genes

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