Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_26261 Corchorus olitorius HOM05D009764 ORTHO05D012097 6.9e-151 537.3 283 100.0
Thecc.08G031300 Theobroma cacao HOM05D009764 ORTHO05D012097 8.9e-90 334.3 296 67.6
Duzib041G0201 Durio zibethinus HOM05D009764 ORTHO05D012097 2.0e-89 333.2 291 68.7
Gohir.A05G192100 Gossypium hirsutum HOM05D009764 ORTHO05D012097 5.4e-87 325.1 300 67.7
Duzib093G0780 Durio zibethinus HOM05D009764 ORTHO05D012097 9.2e-87 324.3 294 66.7
Duzib116G0736 Durio zibethinus HOM05D009764 ORTHO05D012097 5.4e-79 298.5 292 62.0
Gohir.D05G195300 Gossypium hirsutum HOM05D009764 ORTHO05D012097 5.6e-76 288.5 296 60.8
Gorai.009G200200 Gossypium raimondii HOM05D009764 ORTHO05D012097 3.6e-75 285.8 296 60.5
Gohir.D05G260100 Gossypium hirsutum HOM05D009764 ORTHO05D012097 1.1e-74 284.3 298 60.4
Gorai.009G271900 Gossypium raimondii HOM05D009764 ORTHO05D012097 8.9e-74 281.2 280 62.1
Gohir.A05G258364 Gossypium hirsutum HOM05D009764 ORTHO05D012097 1.9e-71 273.5 296 59.1
Gorai.005G109100 Gossypium raimondii HOM05D009764 ORTHO05D012097 2.3e-69 266.5 277 58.1
Gohir.D02G095400 Gossypium hirsutum HOM05D009764 ORTHO05D012097 2.1e-67 260.0 277 57.4
Gorai.002G126600 Gossypium raimondii HOM05D009764 ORTHO05D012097 6.2e-67 258.5 288 56.9
Gohir.D01G102900 Gossypium hirsutum HOM05D009764 ORTHO05D012097 3.1e-66 256.1 288 56.2
Gohir.A01G114500 Gossypium hirsutum HOM05D009764 ORTHO05D012097 4.6e-62 242.3 288 55.2
Gohir.A03G079500 Gossypium hirsutum HOM05D009764 ORTHO05D012097 2.4e-47 193.4 226 53.1
Ciclev10004012m.g Citrus clementina HOM05D009764 ORTHO05D013404 1.3e-27 127.9 275 37.1
Haze_22534 Corylus avellana HOM05D009764 ORTHO05D001632 8.4e-24 115.2 280 35.0
CiPaw.07G158700 Carya illinoinensis HOM05D009764 ORTHO05D001632 7.1e-23 112.1 279 35.8
Cfa013859 Carpinus fangiana HOM05D009764 ORTHO05D001632 1.5e-20 104.4 280 33.2
Manes.05G156600 Manihot esculenta HOM05D020394 ORTHO05D012097 6.9e-18 95.5 289 34.3
Manes.18G019775 Manihot esculenta HOM05D020394 ORTHO05D012097 6.9e-18 95.5 285 35.1
TWI36G0536 Tripterygium wilfordii HOM05D009764 ORTHO05D012097 1.5e-17 94.4 268 34.7
CiPaw.08G059600 Carya illinoinensis HOM05D009764 ORTHO05D001632 7.7e-17 92.0 285 33.0
TAR381G0807 Trochodendron aralioides HOM05D001749 ORTHO05D001632 2.9e-16 90.1 280 30.4
Lj4C36T10 Lonicera japonica HOM05D001749 ORTHO05D001632 6.5e-16 89.0 277 30.7
Potri.005G229800 Populus trichocarpa HOM05D020394 ORTHO05D012097 2.7e-14 83.6 287 35.5
TAR628G1444 Trochodendron aralioides HOM05D001749 ORTHO05D001632 3.6e-14 83.2 290 31.4
Thhalv10010637m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 1.8e-13 80.9 295 31.9
Nn1g04912 Nelumbo nucifera HOM05D001749 ORTHO05D001632 1.8e-13 80.9 294 28.6
Dinv40015 Davidia involucrata HOM05D001749 ORTHO05D001632 2.3e-13 80.5 275 26.2
Rhsim08G0119900 Rhododendron simsii HOM05D001749 ORTHO05D001632 3.0e-13 80.1 282 27.3
Nn5g29676 Nelumbo nucifera HOM05D001749 ORTHO05D001632 6.7e-13 79.0 290 28.6
MBI16_g30353_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 1.1e-12 78.2 275 29.5
RcHm_v2.0_Chr2g0100901 Rosa chinensis HOM05D001749 ORTHO05D001632 1.1e-12 78.2 289 29.1
Sabra02G0026800 Salix brachista HOM05D020394 ORTHO05D012097 2.0e-12 77.4 295 31.2
Aa31LG1G14960 Aethionema arabicum HOM05D001749 ORTHO05D001632 3.3e-12 76.6 286 29.7
Potri.002G033100 Populus trichocarpa HOM05D020394 ORTHO05D012097 4.3e-12 76.3 295 31.2
Eucgr.F01877 Eucalyptus grandis HOM05D009764 ORTHO05D001632 7.4e-12 75.5 271 31.0
C08p26160 Brassica napus HOM05D001749 ORTHO05D001632 9.7e-12 75.1 289 33.9
CARHR281310 Cardamine hirsuta HOM05D001749 ORTHO05D001632 9.7e-12 75.1 296 29.7
HanXRQChr09g0261391 Helianthus annuus HOM05D001749 ORTHO05D001632 9.7e-12 75.1 286 29.7
C01p29520 Brassica napus HOM05D001749 ORTHO05D001632 1.3e-11 74.7 294 29.9
BolC1t02894H Brassica oleracea HOM05D001749 ORTHO05D001632 1.3e-11 74.7 294 29.9
BolC8t50232H Brassica oleracea HOM05D001749 ORTHO05D001632 1.3e-11 74.7 290 34.1
BcaC09g50057 Brassica carinata HOM05D001749 ORTHO05D001632 1.7e-11 74.3 294 29.6
CANSAT25G1766 Cannabis sativa HOM05D001749 ORTHO05D001632 2.2e-11 73.9 294 30.6
BcaC07g39561 Brassica carinata HOM05D001749 ORTHO05D001632 2.8e-11 73.6 290 32.8
Thhalv10019434m.g Eutrema salsugineum HOM05D010946 ORTHO05D012997 4.8e-11 72.8 271 26.9
MBI16_g08780_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 4.8e-11 72.8 285 29.1
THA.LOC104819200 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 4.8e-11 72.8 291 32.0
Thhalv10004766m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 6.3e-11 72.4 297 29.0
CSS0042795 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 8.2e-11 72.0 273 27.8
Carub.0008s2808 Capsella rubella HOM05D001749 ORTHO05D001632 8.2e-11 72.0 294 31.3
Hma1.2p1_0224F.1_g094445 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 1.1e-10 71.6 288 26.4
Hma1.2p1_2993F.1_g331370 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 1.1e-10 71.6 288 26.4
C07p46070 Brassica napus HOM05D001749 ORTHO05D001632 1.4e-10 71.2 287 29.6
THA.LOC104826664 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 1.4e-10 71.2 291 30.2
ECA232G4251 Erigeron canadensis HOM05D001749 ORTHO05D001632 1.8e-10 70.9 285 29.5
FvH4_1g12780 Fragaria vesca HOM05D001749 ORTHO05D001632 1.8e-10 70.9 289 29.1
BolC7t45123H Brassica oleracea HOM05D001749 ORTHO05D001632 2.4e-10 70.5 287 29.6
Cpa.g.sc1139.1 Carica papaya HOM05D001749 ORTHO05D001632 3.1e-10 70.1 288 27.4
Dinv39444 Davidia involucrata HOM05D001749 ORTHO05D001632 3.1e-10 70.1 289 27.3
HanXRQChr11g0325491 Helianthus annuus HOM05D001749 ORTHO05D001632 3.1e-10 70.1 274 29.2
Aqoxy6G01165 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 4.1e-10 69.7 290 26.9
BcaC05g26578 Brassica carinata HOM05D011733 ORTHO05D013404 5.3e-10 69.3 289 28.0
BcaB01g00565 Brassica carinata HOM05D001749 ORTHO05D001632 6.9e-10 68.9 284 30.6
BolC5t31343H Brassica oleracea HOM05D011733 ORTHO05D013404 9.1e-10 68.6 289 27.7
FAN19G1879 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.2e-09 68.2 289 28.7
Sp5g11300 Schrenkiella parvula HOM05D001749 ORTHO05D001632 1.2e-09 68.2 295 29.5
A01p23800 Brassica napus HOM05D001749 ORTHO05D001632 1.5e-09 67.8 292 28.4
A09p44040 Brassica napus HOM05D001749 ORTHO05D001632 1.5e-09 67.8 286 31.5
BraA01t02289Z Brassica rapa HOM05D001749 ORTHO05D001632 1.5e-09 67.8 292 28.4
BraA09t39862Z Brassica rapa HOM05D001749 ORTHO05D001632 1.5e-09 67.8 286 31.5
HanXRQChr13g0395401 Helianthus annuus HOM05D001749 ORTHO05D001632 1.5e-09 67.8 284 26.4
BcaC04g23126 Brassica carinata HOM05D001749 ORTHO05D001632 2.0e-09 67.4 296 28.4
BolC9t54075H Brassica oleracea HOM05D001749 ORTHO05D001632 2.0e-09 67.4 296 28.4
DCAR_025960 Daucus carota HOM05D001749 ORTHO05D001632 2.0e-09 67.4 288 30.9
Sabra05G0177700 Salix brachista HOM05D020394 ORTHO05D012097 2.0e-09 67.4 294 31.0
A03p48050 Brassica napus HOM05D001749 ORTHO05D001632 3.4e-09 66.6 289 29.1
BraA03t13912Z Brassica rapa HOM05D001749 ORTHO05D001632 3.4e-09 66.6 289 29.1
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 3.4e-09 66.6 278 26.3
MD02G1143400 Malus domestica HOM05D001749 ORTHO05D001632 3.4e-09 66.6 289 27.7
GSVIVG01018920001 Vitis vinifera HOM05D001749 ORTHO05D001632 3.4e-09 66.6 277 24.9
FAN28G1045 Fragaria x ananassa HOM05D001749 ORTHO05D001632 4.5e-09 66.2 289 27.0
BcaB05g23254 Brassica carinata HOM05D001749 ORTHO05D001632 7.7e-09 65.5 292 30.5
BcaB05g23255 Brassica carinata HOM05D001749 ORTHO05D001632 7.7e-09 65.5 292 30.5
Eucgr.F01591 Eucalyptus grandis HOM05D009764 ORTHO05D001632 7.7e-09 65.5 278 28.8
Aqoxy5G01581 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 1.0e-08 65.1 288 29.2
AL2G35290 Arabidopsis lyrata HOM05D010946 ORTHO05D012997 1.0e-08 65.1 288 28.8
BcaC05g26766 Brassica carinata HOM05D011733 ORTHO05D013404 1.7e-08 64.3 298 29.2
AUR62014496 Chenopodium quinoa HOM05D001749 ORTHO05D001632 1.7e-08 64.3 280 25.7
COL.COLO4_22034 Corchorus olitorius HOM05D001749 ORTHO05D001632 1.7e-08 64.3 275 28.4
AT5G66440 Arabidopsis thaliana HOM05D001749 ORTHO05D001632 2.2e-08 63.9 298 28.5
Potri.007G021500 Populus trichocarpa HOM05D001749 ORTHO05D001632 2.2e-08 63.9 303 28.1
THA.LOC104813819 Tarenaya hassleriana HOM05D010946 ORTHO05D012997 2.2e-08 63.9 281 26.0
A09p38420 Brassica napus HOM05D011733 ORTHO05D013404 2.9e-08 63.5 286 28.7
BraA09t39351Z Brassica rapa HOM05D011733 ORTHO05D013404 2.9e-08 63.5 286 28.7
Cc07_g09890 Coffea canephora HOM05D001749 ORTHO05D001632 2.9e-08 63.5 300 27.7
Gorai.008G066400 Gossypium raimondii HOM05D001749 ORTHO05D001632 2.9e-08 63.5 281 27.8
C02p32490 Brassica napus HOM05D010946 ORTHO05D012997 5.0e-08 62.8 274 25.5
CANSAT11G0884 Cannabis sativa HOM05D001749 ORTHO05D001632 5.0e-08 62.8 281 26.0
PSO541G5621 Papaver somniferum HOM05D001749 ORTHO05D001632 5.0e-08 62.8 290 30.7
Peaxi162Scf00140g00031 Petunia axillaris HOM05D001749 ORTHO05D001632 5.0e-08 62.8 270 27.4
TWI56G0142 Tripterygium wilfordii HOM05D009764 ORTHO05D012097 6.5e-08 62.4 268 29.5
Migut.B00219 Erythranthe guttata HOM05D001749 ORTHO05D001632 8.5e-08 62.0 281 25.6
Gohir.D12G063200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 8.5e-08 62.0 281 27.4
Rhsim06G0030100 Rhododendron simsii HOM05D001749 ORTHO05D001632 8.5e-08 62.0 271 29.2
BcaNung05716 Brassica carinata HOM05D001749 ORTHO05D001632 1.1e-07 61.6 294 28.2
C05p26330 Brassica napus HOM05D011733 ORTHO05D013404 1.1e-07 61.6 293 29.4
Cfa004342 Carpinus fangiana HOM05D001749 ORTHO05D001632 1.1e-07 61.6 292 26.7
Gohir.A12G063300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.1e-07 61.6 281 28.5
Thecc.08G031100 Theobroma cacao HOM05D041493 ORTHO05D034856 1.1e-07 61.6 259 26.6
Sp5g30500 Schrenkiella parvula HOM05D010946 ORTHO05D012997 1.4e-07 61.2 272 25.7
BcaB02g10030 Brassica carinata HOM05D001749 ORTHO05D001632 1.9e-07 60.8 293 24.2
Carub.0002s2220 Capsella rubella HOM05D010946 ORTHO05D012997 1.9e-07 60.8 280 27.5
CAN.G1226.48 Capsicum annuum HOM05D001749 ORTHO05D001632 1.9e-07 60.8 290 26.2
HanXRQChr04g0103991 Helianthus annuus HOM05D001749 ORTHO05D001632 1.9e-07 60.8 279 25.8
A07p17520 Brassica napus HOM05D001749 ORTHO05D001632 2.5e-07 60.5 290 26.2
BraA07t29472Z Brassica rapa HOM05D001749 ORTHO05D001632 2.5e-07 60.5 290 26.2
Potri.004G157300 Populus trichocarpa HOM05D001749 ORTHO05D001632 2.5e-07 60.5 277 24.9
Sp1g23880 Schrenkiella parvula HOM05D011733 ORTHO05D013404 2.5e-07 60.5 279 27.2
BcaC05g26593 Brassica carinata HOM05D011733 ORTHO05D013404 3.2e-07 60.1 292 28.8
CSS0005210 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 3.2e-07 60.1 273 28.2
A02p19870 Brassica napus HOM05D010946 ORTHO05D012997 4.2e-07 59.7 275 25.8
Sp2g30290 Schrenkiella parvula HOM05D001749 ORTHO05D001632 4.2e-07 59.7 284 29.2
BraA02t07020Z Brassica rapa HOM05D010946 ORTHO05D012997 5.5e-07 59.3 275 25.8
Thhalv10008556m.g Eutrema salsugineum HOM05D011733 ORTHO05D013404 5.5e-07 59.3 279 30.1
Duzib147G1275 Durio zibethinus HOM05D001749 ORTHO05D001632 7.2e-07 58.9 285 26.0
FAN23G0952 Fragaria x ananassa HOM05D001749 ORTHO05D001632 9.4e-07 58.5 275 26.5
Oeu041631.1 Olea europaea HOM05D001749 ORTHO05D001632 9.4e-07 58.5 276 25.0
BcaNung05717 Brassica carinata HOM05D001749 ORTHO05D001632 1.6e-06 57.8 88 44.3
PGSC0003DMG400003523 Solanum tuberosum HOM05D001749 ORTHO05D001632 1.6e-06 57.8 275 26.5
THA.LOC104818171 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 1.6e-06 57.8 284 25.4
Aa31LG4G19030 Aethionema arabicum HOM05D001749 ORTHO05D001632 2.1e-06 57.4 280 27.1
C09p11860 Brassica napus HOM05D001749 ORTHO05D001632 2.1e-06 57.4 295 27.8
Duzib187G2007 Durio zibethinus HOM05D001749 ORTHO05D001632 2.1e-06 57.4 274 27.0
PGR083G2645 Punica granatum HOM05D009764 ORTHO05D001632 2.1e-06 57.4 309 28.2
Sc15g0007080 Simmondsia chinensis HOM05D001749 ORTHO05D001632 2.1e-06 57.4 281 26.3
Sopen04g034230 Solanum pennellii HOM05D001749 ORTHO05D001632 2.1e-06 57.4 281 26.3
AL1G32340 Arabidopsis lyrata HOM05D011627 ORTHO05D013737 2.7e-06 57.0 271 25.8
Gohir.D10G091900 Gossypium hirsutum HOM05D001749 ORTHO05D001632 2.7e-06 57.0 283 27.2
C05p26300 Brassica napus HOM05D011733 ORTHO05D013404 3.6e-06 56.6 285 28.1
BolC2t09281H Brassica oleracea HOM05D010946 ORTHO05D012997 3.6e-06 56.6 274 24.1
AT1G75360 Arabidopsis thaliana HOM05D010946 ORTHO05D012997 4.7e-06 56.2 282 28.0
FvH4_7g02350 Fragaria vesca HOM05D001749 ORTHO05D001632 4.7e-06 56.2 124 33.1
AL5G31290 Arabidopsis lyrata HOM05D001749 ORTHO05D001632 6.1e-06 55.8 288 25.0
Hma1.2p1_0469F.1_g159000 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 6.1e-06 55.8 269 26.8
Lj1g0002065 Lotus japonicus HOM05D016445 ORTHO05D019220 6.1e-06 55.8 302 25.8
Potri.009G119000 Populus trichocarpa HOM05D001749 ORTHO05D001632 6.1e-06 55.8 278 25.5
ClCG08G014830 Citrullus lanatus HOM05D024629 ORTHO05D025095 7.9e-06 55.5 265 26.8
Gorai.011G100900 Gossypium raimondii HOM05D001749 ORTHO05D001632 7.9e-06 55.5 283 26.9
Prupe.7G158300 Prunus persica HOM05D001749 ORTHO05D001632 7.9e-06 55.5 280 25.4
Solyc02g084960.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 7.9e-06 55.5 275 26.9
Solyc04g080640.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 7.9e-06 55.5 281 26.3


User provided reference genes

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