Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 7.1e-122 440.7 229 100.0
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.9e-99 365.5 227 83.3
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 2.5e-95 352.4 220 82.7
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 5.7e-95 351.3 220 80.5
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.4e-92 342.0 223 77.6
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 4.5e-92 341.7 219 79.0
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.9e-91 339.0 223 76.7
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 2.5e-90 335.9 221 75.6
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 5.5e-90 334.7 221 73.8
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.4e-88 330.1 222 73.0
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.4e-88 330.1 228 70.6
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.8e-88 329.7 221 74.2
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 6.7e-88 327.8 223 71.3
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.0e-87 326.2 221 71.9
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 2.5e-87 325.9 223 71.3
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 5.7e-87 324.7 220 72.7
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 7.4e-87 324.3 221 71.5
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 7.4e-87 324.3 221 71.5
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 9.7e-87 323.9 222 70.7
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 9.7e-87 323.9 222 71.2
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 3.7e-86 322.0 221 71.0
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 8.2e-86 320.9 217 70.5
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.4e-85 320.1 223 70.4
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.8e-85 319.7 221 70.1
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 5.3e-85 318.2 230 67.0
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 5.3e-85 318.2 230 70.0
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 6.9e-85 317.8 224 71.0
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 6.9e-85 317.8 220 69.5
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 6.9e-85 317.8 224 67.0
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 9.1e-85 317.4 217 72.8
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.2e-84 317.0 222 69.8
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.5e-84 316.6 223 70.4
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.5e-84 316.6 222 73.4
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 3.4e-84 315.5 206 79.6
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 7.7e-84 314.3 223 70.0
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.0e-83 313.9 223 70.4
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-83 313.5 220 70.0
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.3e-83 313.5 220 68.6
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.3e-83 313.5 220 68.6
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.2e-83 312.8 221 68.8
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.2e-83 312.8 225 68.4
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 2.2e-83 312.8 220 70.5
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 2.9e-83 312.4 223 67.7
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.9e-83 312.4 221 69.7
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 5.0e-83 311.6 218 70.6
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 5.0e-83 311.6 221 69.2
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 5.0e-83 311.6 222 68.9
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 6.5e-83 311.2 193 79.3
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 6.5e-83 311.2 221 68.8
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 8.5e-83 310.8 222 68.5
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 8.5e-83 310.8 222 69.4
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.4e-82 310.1 220 67.7
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.4e-82 310.1 222 69.4
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 2.5e-82 309.3 221 68.8
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 3.2e-82 308.9 221 67.4
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 4.2e-82 308.5 220 67.3
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 5.5e-82 308.1 230 68.7
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 5.5e-82 308.1 226 65.5
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 9.4e-82 307.4 220 68.6
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 9.4e-82 307.4 221 69.2
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 9.4e-82 307.4 222 66.2
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 9.4e-82 307.4 222 68.5
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.6e-81 306.6 221 67.9
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.6e-81 306.6 222 65.8
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 2.1e-81 306.2 228 63.2
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.4e-80 303.5 220 67.3
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.3e-80 302.8 221 69.7
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.3e-80 302.8 222 64.4
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 5.1e-80 301.6 223 67.3
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 8.8e-80 300.8 220 65.9
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.0e-79 299.7 224 63.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.0e-79 299.7 224 63.4
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 2.6e-79 299.3 219 64.8
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 4.4e-79 298.5 220 70.0
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 5.7e-79 298.1 224 62.9
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 7.4e-79 297.7 224 62.9
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.8e-78 295.8 223 66.8
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.1e-77 293.9 232 60.8
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.1e-77 293.9 224 62.1
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.4e-77 293.5 220 66.8
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.3e-77 291.6 217 66.8
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 7.0e-77 291.2 224 61.2
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 7.0e-77 291.2 224 61.2
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 2.0e-76 289.7 219 63.9
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 4.5e-76 288.5 251 59.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 5.9e-76 288.1 224 60.3
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 5.9e-76 288.1 224 60.3
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 5.9e-76 288.1 224 60.3
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.7e-75 286.6 224 60.7
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 3.8e-75 285.4 197 70.1
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.1e-74 283.9 247 59.5
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 1.1e-74 283.9 247 60.3
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.9e-74 283.1 221 63.3
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.5e-74 282.7 223 58.7
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 2.5e-74 282.7 223 67.3
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.5e-74 282.7 224 63.4
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 5.5e-74 281.6 217 68.2
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 9.4e-74 280.8 224 58.5
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.2e-73 280.4 223 58.3
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 2.7e-73 279.3 223 61.4
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 6.1e-73 278.1 232 59.1
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 6.1e-73 278.1 232 59.1
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 8.0e-73 277.7 224 57.6
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.0e-72 277.3 223 58.3
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.3e-72 276.2 196 70.4
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 2.3e-72 276.2 281 54.1
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 3.9e-72 275.4 224 58.0
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 3.9e-72 275.4 224 58.0
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 8.8e-72 274.2 232 57.8
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-71 273.9 224 57.6
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-71 273.9 224 57.6
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.1e-71 273.9 224 57.6
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.8e-70 269.2 220 60.9
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 4.8e-70 268.5 223 60.5
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 7.0e-69 264.6 221 61.1
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 7.0e-69 264.6 226 61.1
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 7.0e-69 264.6 226 61.1
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 1.6e-68 263.5 192 66.1
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.9e-66 256.5 229 54.6
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.9e-66 256.5 229 54.6
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 2.1e-65 253.1 212 60.4
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 4.7e-65 251.9 188 67.0
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 5.2e-64 248.4 223 57.8
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.8e-64 247.7 228 55.3
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 7.5e-63 244.6 195 57.9
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.2e-62 243.0 192 62.5
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 5.9e-60 235.0 199 53.3
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.9e-58 229.9 209 54.1
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 4.2e-58 228.8 160 68.1
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.0e-56 224.2 180 61.7
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 3.0e-56 222.6 160 66.9
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.2e-55 220.7 156 68.6
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.0e-55 219.9 232 55.6
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 3.4e-55 219.2 208 53.8
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 7.5e-55 218.0 154 68.8
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 3.8e-51 205.7 217 47.5
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.1e-49 198.4 220 51.8
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 6.1e-49 198.4 177 56.5
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 2.2e-46 189.9 213 45.5
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.4e-45 187.2 215 44.7
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 7.0e-45 184.9 216 42.6
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 4.7e-41 172.2 143 53.8
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 5.2e-40 168.7 120 66.7
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 7.5e-39 164.9 120 65.8
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.9e-37 160.2 119 63.0
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 2.4e-37 159.8 118 65.3
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.8e-32 143.7 178 41.6
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.1e-32 142.9 127 55.1
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 6.8e-32 141.7 91 72.5
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 2.2e-30 136.7 86 75.6
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.5e-26 124.0 156 42.3
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 7.1e-21 105.1 203 31.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.7e-20 103.2 152 41.4
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.7e-20 103.2 152 41.4
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 4.6e-20 102.4 75 65.3
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 3.0e-19 99.8 64 76.6
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 4.4e-15 85.9 73 56.2
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.3e-14 84.3 80 55.0
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 5.6e-10 68.9 47 63.8
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 9.6e-10 68.2 71 46.5
CAN.G1190.2 Capsicum annuum HOM05D001742 ORTHO05D001689 2.4e-08 63.5 218 26.6
ClCG02G018910 Citrullus lanatus HOM05D001742 ORTHO05D001689 2.6e-07 60.1 208 27.4
MD11G1048300 Malus domestica HOM05D001742 ORTHO05D001689 2.6e-07 60.1 206 27.2
ATR0763G143 Amborella trichopoda HOM05D001742 ORTHO05D001689 7.6e-07 58.5 204 27.0
TAR626G0148 Trochodendron aralioides HOM05D001742 ORTHO05D001689 2.9e-06 56.6 205 25.9
TAR624G0849 Trochodendron aralioides HOM05D001742 ORTHO05D001689 3.8e-06 56.2 205 27.3
MD03G1046000 Malus domestica HOM05D001742 ORTHO05D001689 6.4e-06 55.5 206 27.2
Ca_13916_v3 Cicer arietinum L. HOM05D001742 ORTHO05D001689 8.4e-06 55.1 235 23.8


User provided reference genes

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