Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 3.1e-119 431.8 217 100.0
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.4e-98 363.2 219 82.2
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 1.2e-97 360.1 219 81.3
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 5.7e-97 357.8 219 81.3
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 9.8e-97 357.1 216 81.5
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 2.3e-93 345.9 217 80.2
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 5.2e-82 308.1 200 74.0
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 1.2e-81 307.0 209 71.8
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 4.4e-81 305.1 188 77.1
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 2.9e-80 302.4 205 71.7
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 3.7e-80 302.0 214 68.2
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 6.4e-80 301.2 177 79.1
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.4e-79 300.1 213 68.5
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 1.4e-79 300.1 181 78.5
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 4.1e-79 298.5 181 75.7
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 7.0e-79 297.7 175 79.4
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 9.2e-79 297.4 175 78.9
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 2.7e-78 295.8 175 78.3
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 2.7e-78 295.8 179 73.7
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 4.6e-78 295.0 213 69.5
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 4.6e-78 295.0 179 73.7
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 3.0e-77 292.4 177 76.8
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 3.0e-77 292.4 179 73.2
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 5.0e-77 291.6 177 78.0
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 5.0e-77 291.6 176 75.6
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 5.0e-77 291.6 179 76.0
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 8.6e-77 290.8 179 75.4
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 8.6e-77 290.8 197 70.6
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 1.1e-76 290.4 228 66.7
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 1.5e-76 290.0 213 67.1
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 2.5e-76 289.3 177 75.7
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 3.3e-76 288.9 198 72.7
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 5.6e-76 288.1 177 74.0
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 5.6e-76 288.1 181 76.2
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 5.6e-76 288.1 209 67.0
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 1.6e-75 286.6 242 60.7
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 2.8e-75 285.8 176 79.0
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 3.6e-75 285.4 184 72.8
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 4.7e-75 285.0 179 74.9
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 1.1e-74 283.9 203 69.5
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 1.4e-74 283.5 172 74.4
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 1.8e-74 283.1 219 66.7
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 4.0e-74 282.0 176 76.1
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 8.9e-74 280.8 189 70.4
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 1.2e-73 280.4 182 72.0
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 1.2e-73 280.4 187 70.1
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 2.6e-73 279.3 213 64.3
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 5.8e-73 278.1 174 74.1
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 7.5e-73 277.7 211 63.5
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 9.8e-73 277.3 197 67.5
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 2.2e-72 276.2 174 72.4
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 1.4e-71 273.5 179 69.8
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 7.1e-71 271.2 177 71.2
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 7.1e-71 271.2 187 66.3
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 1.2e-70 270.4 211 63.5
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 1.2e-70 270.4 234 59.4
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 1.6e-70 270.0 208 63.9
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 2.7e-70 269.2 179 70.4
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 2.7e-70 269.2 182 70.3
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 2.3e-69 266.2 211 62.6
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 2.3e-69 266.2 211 62.6
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 3.0e-69 265.8 210 62.4
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 3.0e-69 265.8 210 62.4
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 8.6e-69 264.2 175 70.3
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 1.1e-68 263.8 176 69.9
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 1.9e-68 263.1 197 65.5
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 4.3e-68 261.9 175 69.1
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 4.3e-68 261.9 204 63.7
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 4.3e-68 261.9 204 63.7
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 7.3e-68 261.2 180 70.6
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 9.5e-68 260.8 209 63.6
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 1.2e-67 260.4 216 63.4
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 1.6e-67 260.0 216 62.5
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 2.1e-67 259.6 170 71.8
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 2.8e-67 259.2 176 65.3
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 3.6e-67 258.8 212 60.4
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 4.7e-67 258.5 224 60.3
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 8.1e-67 257.7 216 62.0
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 8.1e-67 257.7 216 63.4
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 1.1e-66 257.3 221 59.3
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 5.2e-66 255.0 203 62.6
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 1.2e-65 253.8 173 68.2
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 9.9e-65 250.8 185 67.6
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 1.3e-64 250.4 198 60.6
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 4.9e-64 248.4 183 66.1
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 8.4e-64 247.7 183 65.6
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 2.4e-63 246.1 206 62.6
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 5.4e-63 245.0 171 67.8
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 3.0e-61 239.2 183 66.1
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 4.3e-60 235.3 164 68.9
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 1.1e-58 230.7 137 74.5
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 1.8e-58 229.9 188 64.9
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 2.4e-58 229.6 212 57.1
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 3.1e-58 229.2 177 62.7
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 1.3e-56 223.8 133 78.2
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 2.5e-52 209.5 143 69.9
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 1.8e-50 203.4 171 56.7
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 1.8e-50 203.4 125 79.2
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 1.7e-48 196.8 154 63.6
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 1.9e-47 193.4 193 52.3
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 1.1e-44 184.1 169 49.1
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 3.3e-44 182.6 161 57.8
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 7.4e-44 181.4 181 51.9
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 1.6e-43 180.3 167 49.1
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 5.3e-42 175.3 179 48.6
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 9.9e-41 171.0 143 58.0
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 4.9e-40 168.7 181 50.3
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 3.0e-37 159.5 95 73.7
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 3.1e-34 149.4 119 63.0
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 3.1e-34 149.4 99 69.7
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 5.3e-34 148.7 116 61.2
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 3.4e-33 146.0 107 68.2
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 2.2e-32 143.3 84 76.2
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 2.1e-30 136.7 88 71.6
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 7.9e-30 134.8 114 61.4
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 6.5e-24 115.2 71 78.9
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 3.2e-23 112.8 126 44.4
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 3.2e-23 112.8 135 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 5.5e-23 112.1 147 46.9
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 2.7e-22 109.8 127 47.2
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 8.7e-21 104.8 63 71.4
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 3.3e-20 102.8 99 55.6
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 3.8e-16 89.4 71 63.4
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 1.1e-15 87.8 54 72.2
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 1.6e-14 84.0 101 49.5
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 8.8e-13 78.2 125 33.6
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 1.4e-10 70.9 48 66.7
PRCOL_00005216 Prasinoderma coloniale HOM05D006215 ORTHO05D007719 9.1e-10 68.2 193 33.2
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 1.2e-09 67.8 36 86.1
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 1.0e-08 64.7 45 64.4


User provided reference genes

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