Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.6e-46 189.1 97 100.0
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 9.9e-25 116.7 64 90.6
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 1.1e-20 103.2 63 77.8
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 2.5e-20 102.1 64 73.4
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 3.3e-20 101.7 64 75.0
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 1.6e-19 99.4 64 75.0
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 4.8e-19 97.8 64 70.3
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 8.2e-19 97.1 64 70.3
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.4e-18 96.3 64 70.3
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 1.8e-18 95.9 64 67.2
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 2.4e-18 95.5 64 67.2
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.4e-18 95.5 64 70.3
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 6.9e-18 94.0 64 65.6
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 9.0e-18 93.6 64 67.2
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 1.5e-17 92.8 64 65.6
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 1.5e-17 92.8 64 64.1
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 4.5e-17 91.3 64 64.1
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 4.5e-17 91.3 64 67.2
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 4.5e-17 91.3 64 67.2
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 5.8e-17 90.9 64 64.1
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.8e-17 90.9 64 64.1
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.8e-17 90.9 64 64.1
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 5.8e-17 90.9 64 64.1
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 1.0e-16 90.1 64 62.5
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.3e-16 89.7 67 61.2
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 1.3e-16 89.7 67 59.7
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 2.2e-16 89.0 64 62.5
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.9e-16 88.6 64 60.9
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.8e-16 88.2 64 64.1
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 4.9e-16 87.8 64 62.5
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 4.9e-16 87.8 64 62.5
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 6.5e-16 87.4 64 62.5
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 6.5e-16 87.4 64 62.5
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 6.5e-16 87.4 64 60.9
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 6.5e-16 87.4 64 59.4
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 6.5e-16 87.4 65 60.0
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 6.5e-16 87.4 64 60.9
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 6.5e-16 87.4 67 61.2
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 6.5e-16 87.4 64 62.5
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 6.5e-16 87.4 66 62.1
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 8.4e-16 87.0 67 62.7
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 8.4e-16 87.0 64 60.9
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 1.1e-15 86.7 73 56.2
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.1e-15 86.7 73 56.2
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.1e-15 86.7 61 63.9
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.1e-15 86.7 67 61.2
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 1.4e-15 86.3 64 62.5
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.4e-15 86.3 67 58.2
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.4e-15 86.3 64 57.8
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.4e-15 86.3 69 59.4
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 1.9e-15 85.9 73 57.5
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.9e-15 85.9 67 59.7
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 1.9e-15 85.9 64 62.5
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.9e-15 85.9 64 59.4
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 1.9e-15 85.9 64 59.4
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 2.5e-15 85.5 65 58.5
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 2.5e-15 85.5 64 59.4
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 2.5e-15 85.5 64 60.9
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 3.2e-15 85.1 73 54.8
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 3.2e-15 85.1 64 62.5
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 3.2e-15 85.1 64 59.4
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 4.2e-15 84.7 67 56.7
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 4.2e-15 84.7 64 57.8
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 4.2e-15 84.7 64 59.4
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 4.2e-15 84.7 64 59.4
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 4.2e-15 84.7 64 57.8
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 5.5e-15 84.3 64 59.4
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 5.5e-15 84.3 64 59.4
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 5.5e-15 84.3 67 59.7
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 5.5e-15 84.3 64 57.8
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 7.1e-15 84.0 64 57.8
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 7.1e-15 84.0 64 57.8
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 7.1e-15 84.0 65 55.4
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 9.3e-15 83.6 64 56.2
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 9.3e-15 83.6 64 59.4
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 9.3e-15 83.6 67 58.2
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.2e-14 83.2 64 57.8
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.2e-14 83.2 64 57.8
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 1.6e-14 82.8 64 57.8
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.6e-14 82.8 64 56.2
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.6e-14 82.8 67 58.2
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 2.7e-14 82.0 64 59.4
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 7.9e-14 80.5 73 50.7
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 1.8e-13 79.3 95 45.3
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 1.8e-13 79.3 64 56.2
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 2.3e-13 79.0 64 56.2
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 3.0e-13 78.6 67 53.7
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 3.0e-13 78.6 64 56.2
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 3.0e-13 78.6 64 56.2
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 3.0e-13 78.6 64 56.2
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 3.0e-13 78.6 67 52.2
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 3.0e-13 78.6 64 53.1
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 5.1e-13 77.8 64 54.7
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 5.1e-13 77.8 90 45.6
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 6.7e-13 77.4 67 55.2
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 8.7e-13 77.0 61 57.4
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 1.1e-12 76.6 64 54.7
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.9e-12 75.9 64 54.7
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 5.7e-12 74.3 61 57.4
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.6e-11 72.8 73 49.3
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 6.3e-11 70.9 91 44.0
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 6.3e-11 70.9 64 48.4
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 1.8e-10 69.3 64 51.6
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 3.1e-10 68.6 76 47.4
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 4.1e-10 68.2 48 60.4
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 5.3e-10 67.8 64 51.6
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.0e-09 65.9 64 37.5
COL.COLO4_03873 Corchorus olitorius HOM05D065443 ORTHO05D160768 2.2e-08 62.4 34 85.3
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 3.8e-08 61.6 81 38.3
COL.COLO4_08512 Corchorus olitorius HOM05D065443 ORTHO05D006828 5.0e-08 61.2 32 90.6
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 4.2e-07 58.2 63 42.9
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 3.6e-06 55.1 42 52.4


User provided reference genes

Program Settings