Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 3.7e-78 295.0 175 100.0
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 3.2e-58 228.8 148 77.7
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 4.7e-57 224.9 148 75.7
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 2.6e-55 219.2 149 75.2
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 3.4e-55 218.8 175 74.3
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 5.4e-53 211.5 176 73.3
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 2.8e-46 189.1 150 66.7
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 2.4e-45 186.0 145 64.8
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 3.5e-44 182.2 153 61.4
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 1.3e-43 180.3 147 64.6
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 2.9e-43 179.1 133 63.9
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 3.8e-43 178.7 141 66.7
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 3.3e-42 175.6 141 66.0
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 4.2e-42 175.3 135 63.7
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 5.6e-42 174.9 152 57.2
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 7.2e-42 174.5 136 64.0
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 6.1e-41 171.4 136 63.2
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 2.3e-40 169.5 139 62.6
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 2.3e-40 169.5 154 59.7
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 1.2e-39 167.2 155 58.1
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 2.6e-39 166.0 137 62.0
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 6.4e-38 161.4 149 59.1
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 8.3e-38 161.0 135 64.4
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 8.3e-38 161.0 154 55.8
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 8.3e-38 161.0 146 59.6
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 1.1e-37 160.6 143 61.5
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 1.1e-37 160.6 127 60.6
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.4e-37 160.2 117 70.1
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 1.4e-37 160.2 139 62.6
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.8e-37 159.8 144 58.3
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.8e-37 159.8 150 58.0
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.4e-37 159.5 145 55.9
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 2.4e-37 159.5 131 61.1
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 4.1e-37 158.7 160 52.5
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 5.4e-37 158.3 145 59.3
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 9.2e-37 157.5 138 57.2
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.2e-36 157.1 121 63.6
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.2e-36 157.1 121 63.6
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 1.6e-36 156.8 150 55.3
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 2.0e-36 156.4 125 61.6
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.0e-36 156.4 142 59.2
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 3.5e-36 155.6 149 54.4
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 3.5e-36 155.6 127 58.3
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 4.6e-36 155.2 126 65.1
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 5.9e-36 154.8 150 54.7
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 5.9e-36 154.8 127 61.4
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 7.8e-36 154.5 129 59.7
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 7.8e-36 154.5 151 52.3
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.0e-35 154.1 147 55.8
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 1.3e-35 153.7 132 62.1
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 1.3e-35 153.7 151 53.6
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 1.3e-35 153.7 127 61.4
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 1.3e-35 153.7 128 58.6
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 1.3e-35 153.7 128 58.6
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.7e-35 153.3 129 58.1
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 2.9e-35 152.5 149 53.0
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 5.0e-35 151.8 129 63.6
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 6.6e-35 151.4 153 52.3
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.5e-34 150.2 107 67.3
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.9e-34 149.8 135 54.1
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 2.5e-34 149.4 136 56.6
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 3.3e-34 149.1 127 60.6
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 5.6e-34 148.3 127 55.1
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 7.3e-34 147.9 124 59.7
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 9.5e-34 147.5 139 54.7
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.2e-33 147.1 144 55.6
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 1.2e-33 147.1 153 51.0
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.6e-33 146.7 161 60.2
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 2.1e-33 146.4 136 58.1
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.8e-33 146.0 136 58.1
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.8e-33 146.0 138 56.5
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.8e-33 146.0 117 64.1
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 4.7e-33 145.2 138 55.8
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 4.7e-33 145.2 138 55.8
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 4.7e-33 145.2 119 58.8
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 6.2e-33 144.8 135 54.8
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 1.0e-32 144.1 138 55.8
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 1.4e-32 143.7 153 51.0
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 1.8e-32 143.3 122 60.7
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 3.1e-32 142.5 136 54.4
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 4.0e-32 142.1 117 63.2
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 1.2e-31 140.6 138 55.1
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.5e-31 140.2 153 49.7
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 4.4e-31 138.7 115 62.6
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.4e-31 138.7 136 55.1
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 5.8e-31 138.3 116 61.2
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 7.5e-31 137.9 126 54.8
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 7.5e-31 137.9 126 54.8
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 1.3e-30 137.1 148 50.0
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 1.3e-30 137.1 136 53.7
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 1.3e-30 137.1 136 53.7
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 2.2e-30 136.3 148 52.0
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 3.7e-30 135.6 129 55.8
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 6.4e-30 134.8 155 50.3
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.2e-29 132.5 130 54.6
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 5.4e-29 131.7 136 52.2
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 7.0e-29 131.3 135 53.3
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 7.0e-29 131.3 126 54.0
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 7.0e-29 131.3 126 54.0
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 7.0e-29 131.3 126 54.0
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 7.0e-29 131.3 126 54.0
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 7.0e-29 131.3 126 54.0
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 7.0e-29 131.3 126 54.0
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.2e-28 130.6 131 55.0
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.0e-28 129.8 130 53.8
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 2.7e-28 129.4 147 47.6
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 2.7e-28 129.4 131 54.2
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 2.7e-28 129.4 126 53.2
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 4.6e-28 128.6 138 54.3
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 6.0e-28 128.3 157 49.0
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 6.0e-28 128.3 130 53.8
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 7.8e-28 127.9 141 52.5
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.3e-27 126.3 130 51.5
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 5.0e-27 125.2 110 58.2
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 5.0e-27 125.2 152 47.4
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 3.3e-26 122.5 117 57.3
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 4.3e-26 122.1 146 47.3
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 4.3e-26 122.1 126 51.6
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 5.6e-26 121.7 117 58.1
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 4.7e-25 118.6 139 48.9
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 4.7e-25 118.6 117 57.3
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 8.1e-25 117.9 135 48.1
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 1.2e-23 114.0 120 52.5
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.6e-23 112.8 124 51.6
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 3.7e-22 109.0 132 45.5
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 3.2e-21 105.9 111 51.4
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 1.0e-19 100.9 146 45.9
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 5.1e-19 98.6 114 49.1
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.1e-18 97.4 97 56.7
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 7.6e-15 84.7 139 34.5
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 7.1e-13 78.2 121 38.0
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 9.2e-13 77.8 116 37.1
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 9.2e-13 77.8 160 31.2
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 2.1e-12 76.6 48 70.8
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 2.1e-12 76.6 135 34.8
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 3.5e-12 75.9 93 46.2
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 2.3e-11 73.2 116 44.8
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 7.3e-10 68.2 57 59.6
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 8.1e-09 64.7 55 54.5
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.1e-08 62.8 111 34.2
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 6.8e-08 61.6 72 47.2
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 2.0e-07 60.1 171 33.3


User provided reference genes

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