Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 2.4e-139 498.8 248 100.0
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 2.2e-76 289.7 211 60.7
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 4.9e-76 288.5 211 60.2
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.1e-70 270.8 216 57.4
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.2e-69 267.3 209 55.5
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.0e-69 266.5 216 56.5
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 3.7e-68 262.3 209 56.5
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.9e-67 260.0 203 55.7
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 2.4e-67 259.6 203 57.1
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 2.1e-66 256.5 209 54.1
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.1e-66 256.5 204 55.4
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.5e-66 255.8 208 57.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 6.0e-66 255.0 202 57.4
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.0e-65 254.2 211 55.9
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.0e-65 254.2 201 55.7
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 1.0e-65 254.2 188 60.6
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 3.9e-65 252.3 189 59.3
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 5.1e-65 251.9 214 54.7
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 8.6e-65 251.1 202 54.0
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 8.6e-65 251.1 194 58.2
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.5e-64 250.4 196 56.6
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.5e-64 250.4 212 53.8
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.9e-64 250.0 204 56.9
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 2.5e-64 249.6 211 54.0
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.5e-64 249.6 199 56.8
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 4.3e-64 248.8 201 55.7
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 7.3e-64 248.1 195 56.4
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 9.5e-64 247.7 211 55.5
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.6e-63 246.9 204 53.9
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 2.8e-63 246.1 204 52.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.6e-63 245.7 202 55.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 4.7e-63 245.4 197 55.8
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 6.2e-63 245.0 196 56.6
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.4e-62 243.8 208 54.8
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 3.1e-62 242.7 203 52.2
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 3.1e-62 242.7 195 55.9
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.1e-62 242.7 196 55.6
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 4.0e-62 242.3 203 53.7
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 4.0e-62 242.3 195 56.4
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 4.0e-62 242.3 211 53.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.2e-62 241.9 217 52.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 6.8e-62 241.5 197 56.9
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.9e-62 241.1 211 52.1
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.2e-61 240.7 204 52.0
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-61 240.7 200 55.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.5e-61 240.4 217 51.2
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 2.0e-61 240.0 204 52.5
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.6e-61 239.6 196 55.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.6e-61 239.6 195 54.4
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 2.6e-61 239.6 187 56.7
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 3.4e-61 239.2 189 56.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 4.4e-61 238.8 195 53.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.4e-61 238.8 195 55.9
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 5.8e-61 238.4 220 49.5
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 7.6e-61 238.0 194 54.1
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 7.6e-61 238.0 201 55.7
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 9.9e-61 237.7 215 50.7
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.7e-60 236.9 192 55.2
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.7e-60 236.9 220 50.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.7e-60 236.9 202 52.5
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.7e-60 236.9 194 55.2
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 2.2e-60 236.5 191 56.0
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 2.2e-60 236.5 190 55.8
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.9e-60 236.1 203 54.7
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 3.8e-60 235.7 190 55.3
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 3.8e-60 235.7 190 55.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 3.8e-60 235.7 209 50.2
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 8.4e-60 234.6 189 54.5
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-59 234.2 195 53.3
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-59 233.8 195 53.3
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.4e-59 233.8 195 53.3
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.9e-59 233.4 209 50.7
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.9e-59 233.4 212 51.9
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.9e-59 233.4 211 49.3
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 4.2e-59 232.3 208 51.4
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 4.2e-59 232.3 221 48.0
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 5.4e-59 231.9 208 51.4
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 9.2e-59 231.1 208 51.0
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.6e-58 230.3 202 52.0
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.7e-58 229.6 204 50.0
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.5e-58 229.2 214 51.9
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.6e-58 228.8 195 52.3
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-57 227.3 208 50.0
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.7e-57 226.9 207 51.7
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.7e-57 226.9 181 56.4
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 3.9e-57 225.7 185 55.1
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.1e-56 224.2 195 50.3
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 3.3e-56 222.6 193 51.8
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 3.3e-56 222.6 209 48.3
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 9.6e-56 221.1 190 53.2
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 9.6e-56 221.1 189 53.4
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.2e-55 220.7 207 48.8
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 8.1e-55 218.0 191 53.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.8e-54 216.9 233 47.6
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.8e-54 216.9 189 51.3
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 3.1e-54 216.1 189 49.7
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 5.3e-54 215.3 209 49.8
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.8e-53 211.8 196 49.5
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 5.8e-53 211.8 207 47.8
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 5.8e-53 211.8 199 48.7
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.3e-52 210.7 177 53.1
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.2e-52 209.9 207 47.3
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.8e-52 209.1 218 47.7
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 8.4e-52 208.0 174 52.9
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.1e-51 207.6 195 50.8
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 4.2e-51 205.7 231 44.6
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.4e-51 205.3 210 45.7
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.6e-50 203.8 203 48.3
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 8.7e-49 198.0 161 52.8
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 2.5e-48 196.4 167 55.1
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.5e-48 196.4 205 47.8
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 3.3e-48 196.1 147 56.5
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.3e-47 194.1 203 46.8
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 4.8e-47 192.2 187 46.0
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 8.1e-47 191.4 186 45.7
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.1e-46 189.5 216 45.8
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.7e-44 183.7 243 40.3
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 6.4e-44 181.8 176 48.3
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 8.4e-44 181.4 121 63.6
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.2e-43 179.1 203 44.8
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.6e-42 177.2 211 43.1
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.3e-41 174.1 213 41.3
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.3e-38 162.2 210 40.0
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 6.9e-38 161.8 202 40.6
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 7.6e-37 158.3 194 41.8
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.6e-37 158.3 236 41.1
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 6.4e-36 155.2 119 53.8
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 2.5e-35 153.3 106 62.3
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 4.6e-34 149.1 108 59.3
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.2e-29 134.4 127 51.2
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 5.1e-25 119.0 163 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 4.3e-24 115.9 93 45.2
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.4e-22 110.9 108 48.1
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.7e-20 104.0 69 60.9
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 5.1e-17 92.4 62 59.7
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.5e-16 90.9 59 64.4
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 9.7e-16 88.2 71 52.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 4.8e-15 85.9 53 66.0
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 2.0e-13 80.5 35 85.7
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 6.5e-12 75.5 46 63.0
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 1.1e-11 74.7 135 30.4
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 7.2e-11 72.0 117 38.5
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 9.4e-11 71.6 75 42.7
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 4.7e-10 69.3 119 31.9
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.9e-10 68.6 75 44.0
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 8.8e-09 65.1 40 60.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 2.6e-08 63.5 75 42.7
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.4e-08 62.8 49 57.1
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 4.4e-08 62.8 52 57.7
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.4e-06 57.8 60 43.3
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.8e-06 57.4 51 54.9
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.1e-06 56.6 75 40.0


User provided reference genes

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