Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 3.6e-136 488.4 277 100.0
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.2e-131 473.4 277 95.3
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.5e-131 471.9 277 94.9
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.9e-131 471.1 277 94.9
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 2.3e-130 469.2 277 94.6
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 6.6e-130 467.6 277 93.9
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.4e-127 459.9 277 92.4
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 3.0e-127 458.8 277 91.0
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 4.0e-127 458.4 277 91.0
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 8.9e-127 457.2 277 90.3
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.2e-126 456.8 277 90.3
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 2.0e-126 456.1 277 91.0
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 2.6e-126 455.7 277 91.0
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.4e-126 455.3 277 90.3
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.4e-126 454.9 277 89.9
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 89.9
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 89.9
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 89.9
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 90.6
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 89.9
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 89.9
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 9.8e-126 453.8 277 91.0
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 90.3
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 89.9
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 88.8
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 89.9
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 4.9e-125 451.4 277 88.8
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 89.5
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 89.9
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.2e-124 448.7 277 88.4
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 7.0e-124 447.6 277 89.9
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.2e-123 446.8 276 89.9
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 89.2
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 88.4
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 87.4
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 2.0e-123 446.0 277 88.4
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 88.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 88.4
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 88.4
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 89.2
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 87.7
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 87.4
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 86.6
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 86.6
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 88.4
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.0
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 86.3
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 86.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.6e-120 436.4 301 81.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 84.8
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.8e-120 435.6 274 86.5
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 86.6
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 85.6
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 87.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 8.0e-120 434.1 278 85.6
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 86.6
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.0e-119 433.7 274 86.1
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 88.4
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 4.0e-119 431.8 321 77.3
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 8.9e-119 430.6 277 84.8
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 85.9
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.6e-118 429.1 276 85.5
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 86.3
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 3.4e-118 428.7 283 84.5
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 84.5
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 3.4e-118 428.7 261 90.4
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 7.5e-118 427.6 277 86.3
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.2e-117 426.0 277 84.1
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.9e-117 425.6 278 85.3
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.4e-116 423.3 275 85.5
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 4.1e-116 421.8 277 81.2
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 4.1e-116 421.8 277 86.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.2e-115 420.2 275 84.7
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.2e-115 420.2 275 84.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 2.7e-115 419.1 318 75.2
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 6.0e-115 417.9 280 85.0
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 5.0e-114 414.8 277 84.8
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.6e-114 414.5 320 75.3
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 6.6e-114 414.5 261 87.0
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.6e-114 414.1 261 87.0
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.2e-112 410.2 278 83.1
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 2.1e-112 409.5 277 83.0
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.1e-112 409.5 274 84.3
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 4.0e-111 405.2 318 70.1
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 5.8e-110 401.4 270 83.7
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 9.8e-110 400.6 277 81.2
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 9.8e-110 400.6 275 80.7
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 9.8e-110 400.6 299 73.2
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.4e-108 396.7 255 87.8
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 2.4e-108 396.0 278 78.4
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.4e-108 394.8 274 75.9
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 7.1e-108 394.4 269 78.1
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.2e-107 393.7 278 78.8
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 2.7e-107 392.5 273 80.2
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 7.8e-107 391.0 264 83.3
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 5.1e-106 388.3 278 78.8
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 8.6e-106 387.5 256 82.4
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.3e-105 385.6 256 84.4
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 5.6e-105 384.8 277 79.1
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-104 383.3 260 83.1
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 6.8e-103 377.9 230 90.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.8e-103 377.9 355 60.8
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.0e-102 376.3 262 79.8
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.9e-101 372.5 275 76.7
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 3.7e-101 372.1 282 77.3
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 4.9e-101 371.7 331 68.9
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 3.9e-98 362.1 230 87.8
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 8.6e-98 360.9 222 91.0
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.2e-96 357.1 222 91.0
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.1e-92 344.0 277 65.7
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 2.7e-91 339.3 268 72.0
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 5.1e-90 335.1 277 67.1
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.6e-90 334.7 250 77.6
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.6e-90 334.7 250 77.6
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.8e-88 328.6 313 64.5
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 2.0e-86 323.2 224 83.5
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.7e-85 320.1 274 64.2
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.9e-84 316.6 281 66.5
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-83 313.2 274 67.9
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 4.6e-83 312.0 284 65.1
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.3e-82 309.7 274 67.5
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 4.8e-72 275.4 258 60.5
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.5e-68 263.1 187 79.7
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 7.1e-68 261.5 287 52.3
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 9.6e-65 251.1 278 54.7
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 3.0e-58 229.6 155 75.5
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 5.1e-58 228.8 181 75.7
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 9.7e-57 224.6 145 86.9
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 2.2e-56 223.4 129 89.1
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 4.8e-56 222.2 138 83.3
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 7.2e-52 208.4 132 81.1
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.1e-47 191.4 300 45.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 7.9e-43 178.3 97 92.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 5.7e-41 172.2 106 82.1
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 9.7e-41 171.4 90 95.6
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.2e-35 154.5 84 92.9
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.0e-34 149.4 152 57.2
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.5e-30 136.0 74 93.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.5e-30 136.0 74 93.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.8e-29 132.9 80 82.5
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.5e-28 131.0 80 81.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 2.4e-23 113.6 258 37.2
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 5.5e-20 102.4 158 46.2
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 4.0e-18 96.3 149 45.6
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-18 95.9 71 87.3
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 6.8e-18 95.5 151 41.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-17 94.4 147 40.8
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-17 94.0 123 50.4
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.3e-16 91.3 57 77.2
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.7e-16 90.9 71 80.3
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.8e-16 90.1 157 41.4
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 4.9e-16 89.4 160 40.0
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.2e-14 84.7 86 61.6
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.7e-14 82.0 70 67.1
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.0e-13 81.6 186 31.7
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 2.3e-13 80.5 46 82.6
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.5e-12 75.1 46 80.4
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.5e-12 75.1 157 40.8
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.7e-11 72.8 331 28.1
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 4.7e-11 72.8 43 81.4
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 4.4e-09 66.2 268 29.5
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.3e-08 62.0 140 40.7
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 4.6e-06 56.2 38 71.1


User provided reference genes

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