Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24462 Corchorus olitorius HOM05D000476 ORTHO05D017214 3.9e-28 127.5 68 100.0
COL.COLO4_34241 Corchorus olitorius HOM05D000476 ORTHO05D017214 4.4e-27 124.0 68 97.1
COL.COLO4_17948 Corchorus olitorius HOM05D000476 ORTHO05D002733 3.1e-25 117.9 68 94.1
Thecc.02G047400 Theobroma cacao HOM05D000476 ORTHO05D002733 2.9e-23 111.3 68 88.2
Duzib132G0419 Durio zibethinus HOM05D000476 ORTHO05D002733 4.2e-22 107.5 68 85.3
Gohir.A12G034000 Gossypium hirsutum HOM05D000476 ORTHO05D002733 8.0e-21 103.2 68 80.9
Gohir.D12G038500 Gossypium hirsutum HOM05D000476 ORTHO05D002733 3.0e-20 101.3 68 79.4
Gorai.008G040200 Gossypium raimondii HOM05D000476 ORTHO05D002733 3.0e-20 101.3 68 79.4
TWI31G1199 Tripterygium wilfordii HOM05D000476 ORTHO05D002733 5.2e-20 100.5 68 79.4
Gohir.A01G173400 Gossypium hirsutum HOM05D000476 ORTHO05D002733 1.5e-19 99.0 68 82.4
Gohir.D01G165000 Gossypium hirsutum HOM05D000476 ORTHO05D002733 5.7e-19 97.1 68 80.9
Manes.11G106600 Manihot esculenta HOM05D000476 ORTHO05D002733 9.7e-19 96.3 68 75.0
COL.COLO4_07303 Corchorus olitorius HOM05D000476 ORTHO05D017214 1.3e-18 95.9 58 89.7
Atru.chr5.3502 Acer truncatum HOM05D000476 ORTHO05D002733 4.8e-18 94.0 69 78.3
Duzib248G0277 Durio zibethinus HOM05D000476 ORTHO05D002733 6.3e-18 93.6 68 77.9
Cpa.g.sc20.181 Carica papaya HOM05D000476 ORTHO05D002733 8.3e-18 93.2 68 76.5
Gorai.002G205400 Gossypium raimondii HOM05D000476 ORTHO05D002733 3.1e-17 91.3 68 77.9
Ciclev10027792m.g Citrus clementina HOM05D000476 ORTHO05D002733 7.0e-17 90.1 68 69.1
TWI75G1315 Tripterygium wilfordii HOM05D000476 ORTHO05D002733 9.1e-17 89.7 68 73.5
Dinv41890 Davidia involucrata HOM05D000476 ORTHO05D002733 5.9e-16 87.0 68 67.6
Manes.04G065500 Manihot esculenta HOM05D000476 ORTHO05D002733 1.0e-15 86.3 68 67.6
TAR381G0165 Trochodendron aralioides HOM05D000476 ORTHO05D002733 2.2e-15 85.1 68 66.2
Duzib052G0277 Durio zibethinus HOM05D000476 ORTHO05D002733 2.9e-15 84.7 54 81.5
TAR376G0362 Trochodendron aralioides HOM05D000476 ORTHO05D002733 2.9e-15 84.7 68 64.7
Gohir.D04G103750 Gossypium hirsutum HOM05D000476 ORTHO05D017214 8.5e-15 83.2 64 76.6
Gohir.D08G219500 Gossypium hirsutum HOM05D000476 ORTHO05D017214 8.5e-15 83.2 64 76.6
Gohir.D10G134150 Gossypium hirsutum HOM05D000476 ORTHO05D017214 8.5e-15 83.2 64 76.6
Nn5g30916 Nelumbo nucifera HOM05D000476 ORTHO05D002733 1.5e-14 82.4 68 67.6
CANSAT25G0999 Cannabis sativa HOM05D000476 ORTHO05D002733 1.9e-14 82.0 68 73.5
Actinidia32019 Actinidia chinensis HOM05D000476 ORTHO05D002733 3.6e-13 77.8 68 63.2
Nn6g31753 Nelumbo nucifera HOM05D000476 ORTHO05D002733 4.7e-13 77.4 68 57.4
Hma1.2p1_0032F.1_g018870 Hydrangea macrophylla HOM05D000476 ORTHO05D002733 6.1e-13 77.0 68 61.8
Actinidia26337 Actinidia chinensis HOM05D000476 ORTHO05D002733 1.8e-12 75.5 68 63.2
Prupe.8G176200 Prunus persica HOM05D000476 ORTHO05D002733 1.8e-12 75.5 66 63.6
LjContig00081g0004871 Lotus japonicus HOM05D000476 ORTHO05D002733 2.3e-12 75.1 68 63.2
TAR628G1137 Trochodendron aralioides HOM05D000476 ORTHO05D002733 3.0e-12 74.7 70 61.4
Dinv14153 Davidia involucrata HOM05D000476 ORTHO05D002733 4.0e-12 74.3 68 60.3
Lalb_Chr04g0246971 Lupinus albus HOM05D000476 ORTHO05D002733 5.2e-12 73.9 68 63.2
CiPaw.05G090100 Carya illinoinensis HOM05D000476 ORTHO05D002733 6.8e-12 73.6 68 61.8
ClCG02G003580 Citrullus lanatus HOM05D000476 ORTHO05D002733 8.8e-12 73.2 68 64.7
FvH4_2g16330 Fragaria vesca HOM05D000476 ORTHO05D002733 8.8e-12 73.2 66 66.7
FAN24G0897 Fragaria x ananassa HOM05D000476 ORTHO05D002733 8.8e-12 73.2 66 66.7
FAN24G1539 Fragaria x ananassa HOM05D000476 ORTHO05D002733 8.8e-12 73.2 66 66.7
Eucgr.I01506 Eucalyptus grandis HOM05D000476 ORTHO05D002733 1.2e-11 72.8 66 60.6
RcHm_v2.0_Chr6g0280091 Rosa chinensis HOM05D000476 ORTHO05D002733 1.5e-11 72.4 66 63.6
Haze_02039 Corylus avellana HOM05D000476 ORTHO05D002733 2.0e-11 72.0 69 65.2
Aqoxy6G01760 Aquilegia oxysepala HOM05D000476 ORTHO05D002733 2.6e-11 71.6 68 55.9
FAN27G0633 Fragaria x ananassa HOM05D000476 ORTHO05D002733 3.4e-11 71.2 66 65.2
GSVIVG01023932001 Vitis vinifera HOM05D000476 ORTHO05D002733 3.4e-11 71.2 69 58.0
CiPaw.06G117500 Carya illinoinensis HOM05D000476 ORTHO05D002733 4.4e-11 70.9 69 58.0
THA.LOC104804308 Tarenaya hassleriana HOM05D000476 ORTHO05D002733 5.7e-11 70.5 64 64.1
Cfa005338 Carpinus fangiana HOM05D000476 ORTHO05D002733 7.5e-11 70.1 69 65.2
Peaxi162Scf00362g00335 Petunia axillaris HOM05D000476 ORTHO05D002733 7.5e-11 70.1 68 61.8
Rhsim11G0196200 Rhododendron simsii HOM05D000476 ORTHO05D002733 1.3e-10 69.3 67 64.2
Solyc01g112050.3 Solanum lycopersicum HOM05D000476 ORTHO05D002733 1.3e-10 69.3 68 60.3
Sopen01g054100 Solanum pennellii HOM05D000476 ORTHO05D002733 1.3e-10 69.3 68 60.3
PGSC0003DMG400018656 Solanum tuberosum HOM05D000476 ORTHO05D002733 1.3e-10 69.3 68 60.3
Cc09_g10580 Coffea canephora HOM05D000476 ORTHO05D002733 1.7e-10 68.9 68 61.8
Glyma.14G002300 Glycine max HOM05D000476 ORTHO05D002733 1.7e-10 68.9 68 60.3
MD10G1134700 Malus domestica HOM05D000476 ORTHO05D002733 1.7e-10 68.9 66 65.2
PGR142G3940 Punica granatum HOM05D000476 ORTHO05D002733 2.8e-10 68.2 65 66.2
Migut.B00023 Erythranthe guttata HOM05D000476 ORTHO05D002733 3.7e-10 67.8 61 62.3
Glyma.02G310600 Glycine max HOM05D000476 ORTHO05D002733 3.7e-10 67.8 68 60.3
Sed0009158 Sechium edule HOM05D000476 ORTHO05D002733 3.7e-10 67.8 68 60.3
Actinidia24609 Actinidia chinensis HOM05D000476 ORTHO05D017214 4.8e-10 67.4 63 61.9
Gohir.A03G208900 Gossypium hirsutum HOM05D000476 ORTHO05D002733 6.3e-10 67.0 43 79.1
Gohir.D02G230600 Gossypium hirsutum HOM05D000476 ORTHO05D002733 6.3e-10 67.0 43 79.1
Gorai.005G258200 Gossypium raimondii HOM05D000476 ORTHO05D002733 6.3e-10 67.0 43 79.1
arahy.Tifrunner.gnm1.ann1.Y4C5P2 Arachis hypogaea HOM05D000476 ORTHO05D002733 8.3e-10 66.6 68 63.2
arahy.Tifrunner.gnm1.ann1.B6QDWV Arachis hypogaea HOM05D000476 ORTHO05D002733 1.8e-09 65.5 68 60.3
Potri.004G182900 Populus trichocarpa HOM05D000476 ORTHO05D002733 1.8e-09 65.5 64 64.1
Potri.009G142900 Populus trichocarpa HOM05D000476 ORTHO05D002733 1.8e-09 65.5 68 60.3
Nitab4.5_0002486g0020 Nicotiana tabacum HOM05D000476 ORTHO05D002733 2.4e-09 65.1 68 57.4
Nitab4.5_0003603g0010 Nicotiana tabacum HOM05D000476 ORTHO05D002733 2.4e-09 65.1 68 57.4
Sabra04G0123000 Salix brachista HOM05D000476 ORTHO05D002733 2.4e-09 65.1 68 60.3
Sed0007751 Sechium edule HOM05D000476 ORTHO05D002733 2.4e-09 65.1 68 60.3
MSTRG.16948 Avicennia marina HOM05D000476 ORTHO05D002733 3.1e-09 64.7 60 61.7
PSO478G3910 Papaver somniferum HOM05D000476 ORTHO05D002733 3.1e-09 64.7 68 58.8
PSO782G5369 Papaver somniferum HOM05D000476 ORTHO05D002733 3.1e-09 64.7 68 58.8
GSVIVG01008684001 Vitis vinifera HOM05D000476 ORTHO05D002733 4.1e-09 64.3 68 52.9
Hma1.2p1_0336F.1_g128950 Hydrangea macrophylla HOM05D000476 ORTHO05D017214 5.4e-09 63.9 57 61.4
Psat2g001480 Pisum sativum HOM05D000476 ORTHO05D002733 5.4e-09 63.9 68 57.4
QL11p054809 Quercus lobata HOM05D000476 ORTHO05D002733 5.4e-09 63.9 70 62.9
CAN.G1235.20 Capsicum annuum HOM05D000476 ORTHO05D002733 9.1e-09 63.2 68 60.3
Nitab4.5_0005649g0020 Nicotiana tabacum HOM05D000476 ORTHO05D002733 9.1e-09 63.2 68 50.0
PSO541G0075 Papaver somniferum HOM05D000476 ORTHO05D002733 9.1e-09 63.2 70 54.3
Actinidia18012 Actinidia chinensis HOM05D000476 ORTHO05D002733 1.2e-08 62.8 68 57.4
CSS0008610 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D002733 1.2e-08 62.8 68 57.4
CSS0049487 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D002733 1.2e-08 62.8 68 57.4
Nitab4.5_0001700g0100 Nicotiana tabacum HOM05D000476 ORTHO05D002733 1.2e-08 62.8 68 48.5
SGA_v2.0_scaffold32G13332 Striga asiatica HOM05D000476 ORTHO05D002733 1.2e-08 62.8 68 57.4
Carub.0003s3104 Capsella rubella HOM05D000476 ORTHO05D002733 1.6e-08 62.4 68 55.9
VMungo0647G2442 Vigna mungo HOM05D000476 ORTHO05D002733 1.6e-08 62.4 68 57.4
Sabra09G0110700 Salix brachista HOM05D000476 ORTHO05D002733 2.0e-08 62.0 64 59.4
Actinidia20558 Actinidia chinensis HOM05D000476 ORTHO05D002733 2.7e-08 61.6 68 55.9
SalBow1G1730 Salvia bowleyana HOM05D000476 ORTHO05D002733 2.7e-08 61.6 60 60.0
SGA_v2.0_scaffold58G20325 Striga asiatica HOM05D000476 ORTHO05D002733 3.5e-08 61.2 60 58.3
TPR.G18626 Trifolium pratense HOM05D000476 ORTHO05D002733 3.5e-08 61.2 68 52.9
AT2G17110 Arabidopsis thaliana HOM05D000476 ORTHO05D002733 4.5e-08 60.8 68 55.9
Peaxi162Scf00476g00124 Petunia axillaris HOM05D000476 ORTHO05D002733 4.5e-08 60.8 68 52.9
Ca_06497_v3 Cicer arietinum L. HOM05D000476 ORTHO05D002733 7.7e-08 60.1 68 54.4
Phvul.008G291200 Phaseolus vulgaris HOM05D000476 ORTHO05D002733 1.7e-07 58.9 68 58.8
AL3G49950 Arabidopsis lyrata HOM05D000476 ORTHO05D002733 2.3e-07 58.5 68 52.9
CAN.G234.10 Capsicum annuum HOM05D000476 ORTHO05D002733 2.3e-07 58.5 68 54.4
CsaV3_7G001730 Cucumis sativus L. HOM05D000476 ORTHO05D002733 2.9e-07 58.2 68 57.4
vmacro02318 Vaccinium macrocarpon HOM05D000476 ORTHO05D002733 2.9e-07 58.2 65 55.4
MELO3C013266.2 Cucumis melo HOM05D000476 ORTHO05D002733 3.8e-07 57.8 68 57.4
Medtr5g098980 Medicago truncatula HOM05D000476 ORTHO05D002733 3.8e-07 57.8 68 52.9
ATR0661G378 Amborella trichopoda HOM05D000476 ORTHO05D002733 5.0e-07 57.4 67 50.7
Carub.0007s0506 Capsella rubella HOM05D000476 ORTHO05D002733 6.6e-07 57.0 69 52.2
Cpa.g.sc26.212 Carica papaya HOM05D000476 ORTHO05D002733 8.6e-07 56.6 68 50.0
Sp3g30410 Schrenkiella parvula HOM05D000476 ORTHO05D002733 8.6e-07 56.6 55 60.0
vmacro17285 Vaccinium macrocarpon HOM05D000476 ORTHO05D002733 1.1e-06 56.2 68 54.4
AL7G15940 Arabidopsis lyrata HOM05D000476 ORTHO05D002733 1.5e-06 55.8 68 52.9
AT4G35240 Arabidopsis thaliana HOM05D000476 ORTHO05D002733 1.5e-06 55.8 68 51.5
PGSC0003DMG400016824 Solanum tuberosum HOM05D000476 ORTHO05D002733 2.5e-06 55.1 68 51.5
SHI05849 Sapria himalayana HOM05D000476 ORTHO05D002733 3.3e-06 54.7 64 50.0
Aa31LG8G14510 Aethionema arabicum HOM05D000476 ORTHO05D002733 5.5e-06 53.9 52 51.9
Solyc10g074470.3 Solanum lycopersicum HOM05D000476 ORTHO05D002733 7.2e-06 53.5 68 51.5
Sopen10g026980 Solanum pennellii HOM05D000476 ORTHO05D002733 7.2e-06 53.5 68 51.5
Lsat_1_v5_gn_3_47821 Lactuca sativa HOM05D000476 ORTHO05D002733 9.5e-06 53.1 68 47.1
MD05G1131700 Malus domestica HOM05D000476 ORTHO05D002733 9.5e-06 53.1 35 77.1


User provided reference genes

Program Settings