Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 7.7e-89 330.5 170 100.0
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 1.4e-42 176.8 170 58.8
Duzib248G0935 Durio zibethinus HOM05D008070 ORTHO05D001888 8.4e-27 124.4 170 49.4
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 6.0e-25 118.2 165 43.6
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 2.1e-22 109.8 167 41.3
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 1.4e-21 107.1 165 43.6
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 1.4e-21 107.1 165 43.6
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 2.4e-21 106.3 167 40.1
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 4.4e-20 102.1 168 41.1
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 1.7e-19 100.1 164 41.5
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 1.7e-19 100.1 174 37.4
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 3.8e-19 99.0 164 39.6
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 1.1e-18 97.4 162 36.4
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 1.1e-18 97.4 167 37.7
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 2.4e-18 96.3 168 40.5
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 9.3e-18 94.4 166 36.1
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 2.7e-17 92.8 171 35.7
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 3.5e-17 92.4 179 39.7
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 6.0e-17 91.7 167 35.3
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.7e-16 90.1 166 37.3
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 8.7e-16 87.8 140 38.6
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 1.1e-15 87.4 138 39.1
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 1.1e-15 87.4 153 38.6
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 1.5e-15 87.0 163 36.8
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 1.9e-15 86.7 132 40.2
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 3.3e-15 85.9 138 39.1
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 5.6e-15 85.1 138 39.1
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 9.6e-15 84.3 175 37.7
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 1.3e-14 84.0 163 36.2
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.3e-14 84.0 149 36.2
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 1.6e-14 83.6 137 38.7
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 1.6e-14 83.6 137 38.7
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 1.6e-14 83.6 137 38.7
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.6e-14 83.6 164 36.6
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.6e-14 83.6 128 37.5
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 2.1e-14 83.2 171 34.5
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 2.8e-14 82.8 164 34.1
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 2.8e-14 82.8 173 37.6
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 2.8e-14 82.8 138 38.4
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 3.6e-14 82.4 138 38.4
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 8.1e-14 81.3 135 34.8
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 1.8e-13 80.1 142 35.2
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 2.4e-13 79.7 133 35.3
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 2.4e-13 79.7 165 32.7
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 2.4e-13 79.7 171 33.9
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 2.6e-12 76.3 176 34.7
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 2.6e-12 76.3 134 35.8
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 3.4e-12 75.9 154 35.7
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 7.6e-12 74.7 165 34.5
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 7.6e-12 74.7 165 34.5
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 7.6e-12 74.7 165 34.5
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 7.6e-12 74.7 132 33.3
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 7.6e-12 74.7 137 32.8
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 9.9e-12 74.3 164 32.3
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.3e-11 73.9 162 31.5
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 2.2e-11 73.2 167 31.1
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 2.9e-11 72.8 167 31.1
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 3.8e-11 72.4 170 31.2
Rhsim12G0042100 Rhododendron simsii HOM05D009745 ORTHO05D011350 3.8e-11 72.4 180 32.8
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 6.4e-11 71.6 166 31.3
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 6.4e-11 71.6 170 30.6
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 8.4e-11 71.2 146 32.9
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 8.4e-11 71.2 166 32.5
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 8.4e-11 71.2 163 33.1
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.1e-10 70.9 151 31.1
A09p17300 Brassica napus HOM05D009121 ORTHO05D001888 1.1e-10 70.9 150 33.3
BraA09t37359Z Brassica rapa HOM05D009121 ORTHO05D001888 1.1e-10 70.9 150 33.3
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 1.1e-10 70.9 167 31.1
CiPaw.02G075500 Carya illinoinensis HOM05D005742 ORTHO05D001888 1.4e-10 70.5 142 31.7
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 1.9e-10 70.1 156 32.1
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 2.4e-10 69.7 166 30.7
C09p21480 Brassica napus HOM05D009121 ORTHO05D001888 2.4e-10 69.7 150 33.3
BolC9t55053H Brassica oleracea HOM05D009121 ORTHO05D001888 2.4e-10 69.7 150 33.3
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 3.2e-10 69.3 166 30.1
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 4.2e-10 68.9 167 31.7
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 4.2e-10 68.9 163 32.5
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 5.4e-10 68.6 134 31.3
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 5.4e-10 68.6 134 31.3
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 5.4e-10 68.6 166 30.7
Dinv15255 Davidia involucrata HOM05D009745 ORTHO05D011350 5.4e-10 68.6 138 37.0
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 7.1e-10 68.2 134 31.3
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 7.1e-10 68.2 165 27.3
unitig_22.g6453 Utricularia gibba HOM05D009745 ORTHO05D011350 7.1e-10 68.2 166 30.1
unitig_23.g29657 Utricularia gibba HOM05D009745 ORTHO05D011350 7.1e-10 68.2 140 31.4
unitig_25.g30577 Utricularia gibba HOM05D009745 ORTHO05D011350 7.1e-10 68.2 140 31.4
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 9.3e-10 67.8 166 30.1
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 9.3e-10 67.8 166 30.1
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 9.3e-10 67.8 171 31.6
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 9.3e-10 67.8 142 32.4
BcaNung05350 Brassica carinata HOM05D009121 ORTHO05D001888 1.2e-09 67.4 150 32.7
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 1.2e-09 67.4 159 35.2
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.1e-09 66.6 142 30.3
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.1e-09 66.6 142 30.3
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.1e-09 66.6 181 29.3
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 2.1e-09 66.6 136 29.4
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 2.1e-09 66.6 136 33.1
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 2.7e-09 66.2 128 37.5
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 4.6e-09 65.5 169 30.8
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 4.6e-09 65.5 133 27.8
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 4.6e-09 65.5 133 27.8
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 4.6e-09 65.5 140 32.9
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 6.0e-09 65.1 130 36.2
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 6.0e-09 65.1 167 29.3
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 6.0e-09 65.1 141 31.9
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 6.0e-09 65.1 142 31.0
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 7.9e-09 64.7 160 28.8
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 7.9e-09 64.7 130 36.2
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 7.9e-09 64.7 133 27.8
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 7.9e-09 64.7 160 28.8
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 7.9e-09 64.7 133 27.8
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 1.0e-08 64.3 169 30.2
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.0e-08 64.3 136 30.9
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.0e-08 64.3 137 29.9
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 1.3e-08 63.9 137 30.7
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 1.8e-08 63.5 138 28.3
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.8e-08 63.5 135 29.6
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 1.8e-08 63.5 160 28.8
Prupe.1G249100 Prunus persica HOM05D008070 ORTHO05D001888 1.8e-08 63.5 157 35.7
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 2.3e-08 63.2 160 28.1
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 2.3e-08 63.2 160 28.1
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 3.0e-08 62.8 136 30.1
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 3.0e-08 62.8 136 28.7
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.9e-08 62.4 159 29.6
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 5.1e-08 62.0 138 28.3
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 5.1e-08 62.0 158 30.4
Oeu012697.1 Olea europaea HOM05D009745 ORTHO05D011350 5.1e-08 62.0 176 27.8
HPP92_027565 Vanilla planifolia HOM05D005742 ORTHO05D001888 5.1e-08 62.0 135 28.1
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 6.7e-08 61.6 149 30.2
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 6.7e-08 61.6 165 30.9
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 6.7e-08 61.6 147 31.3
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 6.7e-08 61.6 159 28.3
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 6.7e-08 61.6 145 31.7
HPP92_017245 Vanilla planifolia HOM05D005742 ORTHO05D001888 6.7e-08 61.6 135 28.1
MSTRG.24819 Avicennia marina HOM05D005742 ORTHO05D001888 8.7e-08 61.2 141 29.8
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 8.7e-08 61.2 159 28.3
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 8.7e-08 61.2 142 29.6
Nn3g16774 Nelumbo nucifera HOM05D008070 ORTHO05D001888 8.7e-08 61.2 177 26.6
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 8.7e-08 61.2 149 32.9
SGA_v2.0_scaffold473G52104 Striga asiatica HOM05D005742 ORTHO05D001888 1.1e-07 60.8 149 27.5
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 1.5e-07 60.5 144 31.2
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.9e-07 60.1 136 30.1
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 1.9e-07 60.1 164 28.7
PGR083G2154 Punica granatum HOM05D008182 ORTHO05D001888 2.5e-07 59.7 147 27.2
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 3.3e-07 59.3 142 28.2
Actinidia37407 Actinidia chinensis HOM05D009745 ORTHO05D011350 4.3e-07 58.9 144 31.9
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 4.3e-07 58.9 138 29.7
Aqoxy2G01248 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 5.6e-07 58.5 167 29.3
MSTRG.21772 Avicennia marina HOM05D005742 ORTHO05D001888 5.6e-07 58.5 141 27.0
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 5.6e-07 58.5 142 28.2
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 9.6e-07 57.8 156 31.4
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 9.6e-07 57.8 145 30.3
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 1.6e-06 57.0 145 33.1
SGA_v2.0_scaffold104G30095 Striga asiatica HOM05D005742 ORTHO05D001888 1.6e-06 57.0 74 36.5
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 2.1e-06 56.6 145 32.4
Aqoxy3G02842 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 2.8e-06 56.2 169 26.6
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 3.7e-06 55.8 133 27.1
Thecc.09G068700 Theobroma cacao HOM05D000036 ORTHO05D000441 3.7e-06 55.8 149 28.2
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 4.8e-06 55.5 141 29.8
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 4.8e-06 55.5 145 32.4
Aqoxy1G03527 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 6.2e-06 55.1 171 28.7
Hma1.2p1_0170F.1_g075030 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 6.2e-06 55.1 81 38.3
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 6.2e-06 55.1 142 26.8
Hma1.2p1_0293F.1_g116340 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 8.1e-06 54.7 79 36.7
Hma1.2p1_0400F.1_g144500 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 8.1e-06 54.7 79 36.7


User provided reference genes

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