Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24042 Corchorus olitorius HOM05D000206 ORTHO05D000232 2.2e-31 138.3 68 100.0
COL.COLO4_24040 Corchorus olitorius HOM05D000206 ORTHO05D000232 3.9e-28 127.5 64 96.9
Gohir.A13G204500 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.0e-15 86.3 61 68.9
Thecc.09G145800 Theobroma cacao HOM05D000206 ORTHO05D000232 1.0e-15 86.3 60 71.7
Gohir.D13G209700 Gossypium hirsutum HOM05D000206 ORTHO05D000232 2.9e-15 84.7 61 67.2
Gorai.013G238800 Gossypium raimondii HOM05D000206 ORTHO05D000232 2.9e-15 84.7 61 67.2
Gohir.A13G204600 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.9e-14 82.0 61 62.3
Gohir.A13G204901 Gossypium hirsutum HOM05D000206 ORTHO05D000232 5.5e-14 80.5 61 60.7
Gohir.A13G205100 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.2e-13 79.3 61 60.7
Gohir.D13G210001 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.2e-13 79.3 61 60.7
Gorai.013G239200 Gossypium raimondii HOM05D000206 ORTHO05D000232 1.2e-13 79.3 61 60.7
Gohir.D13G209800 Gossypium hirsutum HOM05D000206 ORTHO05D000232 2.1e-13 78.6 61 60.7
Gorai.013G238900 Gossypium raimondii HOM05D000206 ORTHO05D000232 2.1e-13 78.6 61 60.7
Gorai.013G239000 Gossypium raimondii HOM05D000206 ORTHO05D000232 2.1e-13 78.6 61 60.7
Gohir.A13G205201 Gossypium hirsutum HOM05D000206 ORTHO05D000232 6.1e-13 77.0 61 57.4
Gohir.D13G210300 Gossypium hirsutum HOM05D000206 ORTHO05D000232 6.1e-13 77.0 61 59.0
Gorai.013G239800 Gossypium raimondii HOM05D000206 ORTHO05D000232 6.1e-13 77.0 61 59.0
Gohir.D13G209900 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.0e-12 76.3 61 57.4
Gohir.D13G210200 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.0e-12 76.3 61 57.4
Gorai.013G239100 Gossypium raimondii HOM05D000206 ORTHO05D000232 1.0e-12 76.3 61 57.4
Gorai.013G239400 Gossypium raimondii HOM05D000206 ORTHO05D000232 1.0e-12 76.3 61 57.4
Prupe.1G470900 Prunus persica HOM05D000206 ORTHO05D000232 1.0e-12 76.3 58 62.1
COL.COLO4_24037 Corchorus olitorius HOM05D000206 ORTHO05D000232 1.8e-12 75.5 61 55.7
Gohir.A13G205150 Gossypium hirsutum HOM05D000206 ORTHO05D000232 2.3e-12 75.1 61 57.4
Gohir.A13G205000 Gossypium hirsutum HOM05D000206 ORTHO05D000232 4.0e-12 74.3 61 55.7
Gohir.A13G205600 Gossypium hirsutum HOM05D000206 ORTHO05D000232 4.0e-12 74.3 61 59.0
Gohir.D13G210100 Gossypium hirsutum HOM05D000206 ORTHO05D000232 4.0e-12 74.3 61 57.4
Gorai.013G239300 Gossypium raimondii HOM05D000206 ORTHO05D000232 4.0e-12 74.3 61 57.4
Gohir.D13G210600 Gossypium hirsutum HOM05D000206 ORTHO05D000232 8.8e-12 73.2 61 59.0
Thecc.09G146100 Theobroma cacao HOM05D000206 ORTHO05D000232 1.2e-11 72.8 58 60.3
Prupe.1G468300 Prunus persica HOM05D000206 ORTHO05D000232 1.5e-11 72.4 56 64.3
Gorai.013G240200 Gossypium raimondii HOM05D000206 ORTHO05D000232 2.6e-11 71.6 61 57.4
Gohir.A13G205700 Gossypium hirsutum HOM05D000206 ORTHO05D000232 3.4e-11 71.2 57 59.6
Gorai.013G240300 Gossypium raimondii HOM05D000206 ORTHO05D000232 9.8e-11 69.7 61 55.7
Gohir.D13G210500 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.3e-10 69.3 61 50.8
Gohir.D13G210700 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.3e-10 69.3 61 55.7
Gorai.013G240000 Gossypium raimondii HOM05D000206 ORTHO05D000232 1.3e-10 69.3 61 50.8
Gorai.013G240500 Gossypium raimondii HOM05D000206 ORTHO05D000232 1.3e-10 69.3 61 55.7
Lj8A611G43 Lonicera japonica HOM05D000206 ORTHO05D000232 1.3e-10 69.3 62 50.0
Gohir.A13G205800 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.7e-10 68.9 61 54.1
Gohir.A13G205900 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.7e-10 68.9 61 55.7
RcHm_v2.0_Chr1g0342041 Rosa chinensis HOM05D000206 ORTHO05D000232 1.7e-10 68.9 56 58.9
COL.COLO4_24038 Corchorus olitorius HOM05D000206 ORTHO05D000232 2.8e-10 68.2 58 51.7
Gohir.D13G210633 Gossypium hirsutum HOM05D000206 ORTHO05D000232 3.7e-10 67.8 61 54.1
Gohir.A13G205400 Gossypium hirsutum HOM05D000206 ORTHO05D000232 4.8e-10 67.4 61 49.2
Gorai.013G240600 Gossypium raimondii HOM05D000206 ORTHO05D000232 4.8e-10 67.4 50 64.0
Prupe.1G468200 Prunus persica HOM05D000206 ORTHO05D000232 4.8e-10 67.4 50 66.0
Gohir.D13G210400 Gossypium hirsutum HOM05D000206 ORTHO05D000232 6.3e-10 67.0 61 49.2
Gorai.013G239900 Gossypium raimondii HOM05D000206 ORTHO05D000232 6.3e-10 67.0 61 49.2
Gohir.D13G210225 Gossypium hirsutum HOM05D000206 ORTHO05D000232 8.3e-10 66.6 61 52.5
Gorai.013G239500 Gossypium raimondii HOM05D000206 ORTHO05D000232 8.3e-10 66.6 61 52.5
Gorai.013G239600 Gossypium raimondii HOM05D000206 ORTHO05D000232 8.3e-10 66.6 61 52.5
Manes.12G120200 Manihot esculenta HOM05D000206 ORTHO05D000232 1.1e-09 66.2 56 57.1
FvH4_2g29960 Fragaria vesca HOM05D000206 ORTHO05D000232 1.8e-09 65.5 56 57.1
Gohir.A13G205300 Gossypium hirsutum HOM05D000206 ORTHO05D000232 2.4e-09 65.1 56 50.0
CiPaw.07G218700 Carya illinoinensis HOM05D000206 ORTHO05D000232 3.1e-09 64.7 56 55.4
FAN15G1132 Fragaria x ananassa HOM05D000206 ORTHO05D000232 4.1e-09 64.3 56 55.4
FAN20G0699 Fragaria x ananassa HOM05D000206 ORTHO05D000232 4.1e-09 64.3 62 50.0
FAN27G2050 Fragaria x ananassa HOM05D000206 ORTHO05D000232 4.1e-09 64.3 56 55.4
FvH4_2g29980 Fragaria vesca HOM05D000206 ORTHO05D000232 5.4e-09 63.9 57 59.6
FvH4_2g29990 Fragaria vesca HOM05D000206 ORTHO05D000232 5.4e-09 63.9 62 50.0
FAN24G0236 Fragaria x ananassa HOM05D000206 ORTHO05D000232 5.4e-09 63.9 62 50.0
FAN24G0741 Fragaria x ananassa HOM05D000206 ORTHO05D000232 5.4e-09 63.9 57 59.6
FAN27G2978 Fragaria x ananassa HOM05D000206 ORTHO05D000232 5.4e-09 63.9 57 59.6
RcHm_v2.0_Chr1g0342061 Rosa chinensis HOM05D000206 ORTHO05D000232 7.0e-09 63.5 56 53.6
RcHm_v2.0_Chr4g0409261 Rosa chinensis HOM05D000206 ORTHO05D000232 9.1e-09 63.2 56 57.1
Gohir.A13G206100 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.6e-08 62.4 61 50.8
Gohir.D13G210250 Gossypium hirsutum HOM05D000206 ORTHO05D000232 3.5e-08 61.2 61 49.2
RcHm_v2.0_Chr6g0312931 Rosa chinensis HOM05D000206 ORTHO05D000232 1.0e-07 59.7 56 50.0
RcHm_v2.0_Chr4g0418441 Rosa chinensis HOM05D000206 ORTHO05D000232 1.3e-07 59.3 56 48.2
RcHm_v2.0_Chr1g0342051 Rosa chinensis HOM05D000206 ORTHO05D000232 5.0e-07 57.4 38 71.1
Gorai.013G239700 Gossypium raimondii HOM05D000206 ORTHO05D000232 6.6e-07 57.0 55 50.9
RcHm_v2.0_Chr5g0041931 Rosa chinensis HOM05D000206 ORTHO05D000232 8.6e-07 56.6 56 50.0
RcHm_v2.0_Chr5g0041981 Rosa chinensis HOM05D000206 ORTHO05D000232 8.6e-07 56.6 56 50.0
Gohir.D13G210275 Gossypium hirsutum HOM05D000206 ORTHO05D000232 1.5e-06 55.8 50 52.0
RcHm_v2.0_Chr5g0079921 Rosa chinensis HOM05D000206 ORTHO05D000232 1.5e-06 55.8 54 48.1
RcHm_v2.0_Chr5g0079991 Rosa chinensis HOM05D000206 ORTHO05D000232 2.5e-06 55.1 54 48.1
RcHm_v2.0_Chr5g0079941 Rosa chinensis HOM05D000206 ORTHO05D000232 3.3e-06 54.7 53 49.1
BolC9t53179H Brassica oleracea HOM05D000206 ORTHO05D000232 5.5e-06 53.9 57 49.1
A09p02380 Brassica napus HOM05D000206 ORTHO05D000232 7.2e-06 53.5 57 47.4
BraA09t35886Z Brassica rapa HOM05D000206 ORTHO05D000232 7.2e-06 53.5 57 47.4
DCAR_016234 Daucus carota HOM05D000206 ORTHO05D000232 7.2e-06 53.5 53 52.8
BcaB01g01984 Brassica carinata HOM05D000206 ORTHO05D000232 9.5e-06 53.1 57 49.1


User provided reference genes

Program Settings