Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 2.9e-210 734.9 361 100.0
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 1.6e-160 569.7 419 70.2
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 1.8e-159 566.2 421 69.8
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 3.6e-152 542.0 398 68.8
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 7.9e-152 540.8 414 67.1
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 3.0e-151 538.9 390 71.0
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 3.3e-142 508.8 395 66.3
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 7.2e-137 491.1 417 59.2
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 2.1e-136 489.6 419 60.4
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 6.1e-136 488.0 421 61.0
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 1.5e-134 483.4 416 58.4
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 5.7e-134 481.5 419 59.2
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 7.5e-134 481.1 415 58.6
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 2.2e-133 479.6 420 59.8
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 2.7e-131 472.6 415 57.1
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 2.7e-131 472.6 414 59.7
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 7.7e-131 471.1 414 59.7
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 1.0e-130 470.7 419 58.5
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 2.9e-130 469.2 375 66.1
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 5.0e-130 468.4 418 56.7
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 2.5e-129 466.1 414 58.2
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 2.5e-129 466.1 414 59.9
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 3.2e-129 465.7 413 59.8
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 4.2e-129 465.3 400 62.8
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 1.2e-128 463.8 418 57.4
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 2.1e-128 463.0 416 57.7
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 3.6e-128 462.2 418 58.9
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 5.2e-127 458.4 418 58.1
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 6.8e-127 458.0 349 66.2
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 4.4e-126 455.3 414 58.0
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 7.5e-126 454.5 414 57.0
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 4.9e-125 451.8 417 56.4
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 4.9e-125 451.8 415 56.6
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 1.1e-124 450.7 414 56.8
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 1.1e-124 450.7 415 56.1
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 1.4e-124 450.3 420 57.6
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 2.4e-124 449.5 416 56.2
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 4.1e-124 448.7 416 55.5
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 7.0e-124 448.0 415 58.1
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 7.0e-124 448.0 414 57.0
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 9.2e-124 447.6 402 56.7
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 1.2e-123 447.2 416 55.0
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 2.0e-123 446.4 416 55.3
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 3.5e-123 445.7 416 55.0
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 4.5e-123 445.3 414 57.0
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 1.0e-122 444.1 420 54.8
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 1.3e-122 443.7 416 54.8
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 3.8e-122 442.2 421 56.5
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 5.0e-122 441.8 415 55.4
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 5.0e-122 441.8 418 55.7
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 8.6e-122 441.0 417 55.6
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 1.1e-121 440.7 414 56.0
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 3.3e-121 439.1 419 54.7
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 3.3e-121 439.1 419 54.7
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 4.3e-121 438.7 416 54.8
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 3.6e-120 435.6 420 54.8
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 1.4e-119 433.7 417 56.1
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 2.3e-119 433.0 419 56.6
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 5.2e-119 431.8 418 55.5
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.8e-119 431.4 419 54.9
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 1.2e-118 430.6 397 57.7
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 1.2e-118 430.6 419 55.4
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 1.5e-118 430.3 417 56.4
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 7.5e-118 427.9 418 53.3
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 1.7e-117 426.8 420 53.6
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 2.2e-117 426.4 418 53.1
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 6.4e-117 424.9 405 54.8
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 8.3e-117 424.5 423 53.0
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.8e-116 423.3 380 58.2
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 4.1e-116 422.2 416 52.4
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 3.0e-114 416.0 421 52.0
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.1e-113 414.1 406 53.2
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 1.9e-113 413.3 417 53.2
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.3e-113 412.1 432 51.4
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.6e-113 411.8 420 52.6
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 7.3e-113 411.4 383 58.0
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 9.5e-113 411.0 420 52.6
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 9.5e-113 411.0 421 51.5
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 4.7e-112 408.7 414 52.9
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 6.2e-112 408.3 414 52.7
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 6.2e-112 408.3 348 59.5
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 1.4e-111 407.1 411 52.3
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.4e-111 407.1 389 51.9
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.3e-111 406.4 404 53.7
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 5.2e-111 405.2 411 51.8
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 5.2e-111 405.2 393 55.2
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 8.9e-111 404.4 414 52.2
CSS0047394 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 1.5e-110 403.7 358 57.5
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 2.0e-110 403.3 413 51.1
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 2.0e-110 403.3 383 57.7
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 3.4e-110 402.5 411 52.3
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.4e-110 402.1 423 51.1
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 5.8e-110 401.7 409 51.6
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 7.5e-110 401.4 414 51.9
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.9e-109 399.4 413 51.6
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 4.9e-109 398.7 411 52.1
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 3.2e-108 396.0 413 50.4
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 4.1e-108 395.6 412 51.9
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 4.1e-108 395.6 417 48.7
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 9.2e-108 394.4 415 50.6
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 1.2e-107 394.0 413 49.6
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.6e-107 392.1 404 52.2
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 3.9e-106 389.0 400 53.0
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 6.6e-106 388.3 402 51.0
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.6e-106 388.3 416 51.0
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 6.6e-106 388.3 416 51.4
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 8.6e-106 387.9 415 49.9
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.5e-105 387.1 415 50.6
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.5e-105 387.1 415 50.6
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.3e-105 386.0 395 52.9
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 9.5e-105 384.4 423 50.4
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 5.2e-103 378.6 415 48.7
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.5e-102 377.1 417 48.7
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 3.4e-102 375.9 420 49.5
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.7e-101 372.5 429 48.3
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 1.4e-100 370.5 416 50.2
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.1e-100 368.2 421 48.7
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 9.2e-100 367.9 375 52.0
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.7e-98 363.6 371 53.6
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 8.6e-98 361.3 425 47.8
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.1e-96 356.7 345 54.5
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 1.3e-93 347.4 412 48.3
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 4.7e-88 328.9 352 51.1
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 1.3e-85 320.9 324 52.2
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 1.6e-83 313.9 412 42.2
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 1.9e-81 307.0 407 43.0
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.1e-79 301.2 394 45.9
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 4.5e-78 295.8 418 41.9
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 1.7e-77 293.9 429 40.6
Phvul.001G053700 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 6.0e-75 285.4 313 51.4
Atru.chr7.2235 Acer truncatum HOM05D004606 ORTHO05D005086 6.2e-64 248.8 272 53.3
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 5.3e-63 245.7 165 68.5
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 9.0e-63 245.0 338 45.9
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 1.3e-61 241.1 415 39.8
CAN.G211.3 Capsicum annuum HOM05D004606 ORTHO05D005086 4.2e-60 236.1 303 44.6
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 3.9e-58 229.6 421 34.0
PGR044G2107 Punica granatum HOM05D004606 ORTHO05D005086 6.3e-56 222.2 292 44.9
SalBow4G2310 Salvia bowleyana HOM05D004606 ORTHO05D005086 2.0e-54 217.2 169 63.3
Glyma.14G127200 Glycine max HOM05D004606 ORTHO05D005086 3.9e-50 203.0 165 63.6
PGR044G1641 Punica granatum HOM05D004606 ORTHO05D005086 4.3e-49 199.5 169 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1911 Anthoceros agrestis HOM05D004606 ORTHO05D005086 1.1e-47 194.9 371 36.9
MSTRG.25861 Avicennia marina HOM05D004606 ORTHO05D005086 1.2e-43 181.4 123 69.9
Ciclev10010356m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.0e-41 174.1 174 53.4
SalBow6G5372 Salvia bowleyana HOM05D004606 ORTHO05D005086 3.3e-41 173.3 163 55.8
SalBow6G2354 Salvia bowleyana HOM05D004606 ORTHO05D005086 5.7e-41 172.6 163 55.8
CAN.G98.22 Capsicum annuum HOM05D004606 ORTHO05D005086 3.2e-36 156.8 125 63.2
QL04p042408 Quercus lobata HOM05D004606 ORTHO05D005086 4.5e-30 136.3 87 71.3
Cc11_g01610 Coffea canephora HOM05D004606 ORTHO05D005086 2.1e-27 127.5 84 70.2
Atru.chr7.2354 Acer truncatum HOM05D004606 ORTHO05D005086 1.0e-26 125.2 91 68.1
MD15G1335000 Malus domestica HOM05D004606 ORTHO05D005086 2.0e-25 120.9 198 37.9
TPR.G9107 Trifolium pratense HOM05D004606 ORTHO05D005086 2.4e-23 114.0 76 68.4
Ciclev10010790m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.5e-22 109.8 109 56.0
Atru.chr7.2355 Acer truncatum HOM05D004606 ORTHO05D005086 2.9e-21 107.1 237 32.9
QL04p042372 Quercus lobata HOM05D004606 ORTHO05D005086 1.0e-18 98.6 66 69.7
QL04p042488 Quercus lobata HOM05D004606 ORTHO05D005086 2.6e-17 94.0 66 66.7
Nn2g11898 Nelumbo nucifera HOM05D004606 ORTHO05D005086 2.7e-06 57.4 37 67.6


User provided reference genes

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