Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 1.1e-145 520.0 276 100.0
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 2.3e-103 379.4 276 73.9
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 4.3e-97 358.6 278 69.8
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 2.3e-95 352.8 278 69.1
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 2.3e-95 352.8 278 69.4
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 3.1e-95 352.4 278 69.4
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 2.9e-93 345.9 278 68.3
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.5e-89 333.6 276 65.9
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.2e-88 330.5 277 65.3
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 3.6e-88 328.9 280 64.6
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 4.0e-87 325.5 281 63.7
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.5e-86 323.6 281 64.1
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.5e-86 323.6 276 64.1
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 2.0e-86 323.2 276 64.9
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 3.4e-86 322.4 282 63.1
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 4.4e-86 322.0 271 65.3
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 5.8e-86 321.6 278 60.8
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 1.7e-85 320.1 277 63.2
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.2e-85 319.7 281 62.3
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 4.9e-85 318.5 282 63.1
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 4.9e-85 318.5 281 63.0
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 6.4e-85 318.2 277 60.6
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 8.4e-85 317.8 281 61.6
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.1e-84 317.4 281 61.9
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 1.2e-83 313.9 274 62.0
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 1.6e-83 313.5 283 61.1
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.1e-83 313.2 276 63.0
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 2.7e-83 312.8 283 61.8
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.5e-83 312.4 283 61.8
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 3.5e-83 312.4 276 61.6
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 3.5e-83 312.4 282 62.1
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 4.6e-83 312.0 276 62.0
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.8e-83 311.2 281 61.9
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.8e-83 311.2 281 61.9
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 7.8e-83 311.2 273 62.6
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 1.3e-82 310.5 281 61.9
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.3e-82 309.7 276 62.0
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 2.3e-82 309.7 273 61.5
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 3.0e-82 309.3 282 63.1
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.0e-82 309.3 283 61.1
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 8.7e-82 307.8 281 60.5
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.1e-81 307.4 273 61.2
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 1.1e-81 307.4 273 60.8
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.5e-81 307.0 273 61.9
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 2.5e-81 306.2 272 62.9
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 2.5e-81 306.2 271 60.9
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.2e-80 303.9 271 61.6
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 8.1e-80 301.2 273 61.2
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 1.1e-79 300.8 273 61.5
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 1.4e-79 300.4 279 59.9
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 1.4e-79 300.4 309 57.3
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 1.8e-79 300.1 276 62.3
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.8e-79 300.1 274 60.2
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 4.0e-79 298.9 282 58.9
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.5e-78 297.0 278 60.1
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.4e-78 295.4 275 61.1
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 9.9e-78 294.3 279 58.4
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 1.7e-77 293.5 284 58.5
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.7e-77 293.5 279 57.0
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 2.2e-77 293.1 279 59.5
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 2.9e-77 292.7 278 58.3
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 3.8e-77 292.4 289 57.8
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 8.4e-77 291.2 273 58.2
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.1e-76 290.8 267 58.1
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.4e-76 290.4 278 55.4
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 4.2e-76 288.9 278 55.4
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.4e-76 288.5 271 60.5
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 7.1e-76 288.1 271 57.6
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 9.3e-76 287.7 232 67.7
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 3.5e-75 285.8 279 58.1
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.0e-74 284.3 264 58.7
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.0e-74 284.3 283 56.2
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 2.3e-74 283.1 271 57.6
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 1.1e-73 280.8 279 56.3
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 1.9e-73 280.0 271 56.8
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 2.5e-73 279.6 279 56.6
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 3.3e-73 279.3 219 67.1
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 4.3e-73 278.9 279 55.6
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 3.6e-72 275.8 277 57.0
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 4.8e-72 275.4 266 56.0
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 8.1e-72 274.6 289 56.1
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.4e-71 273.9 300 54.3
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 1.4e-71 273.9 288 55.6
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.8e-71 273.5 279 53.8
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.8e-71 273.5 277 54.2
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 4.0e-71 272.3 276 55.8
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 5.3e-71 271.9 276 54.0
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 9.0e-71 271.2 277 57.4
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 2.0e-70 270.0 276 55.4
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 2.6e-70 269.6 279 56.3
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 2.6e-70 269.6 274 54.7
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 3.4e-70 269.2 274 55.1
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 4.5e-70 268.9 279 55.9
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 7.6e-70 268.1 276 55.1
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 7.6e-70 268.1 276 54.3
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 9.9e-70 267.7 275 55.3
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 1.3e-69 267.3 276 54.3
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 1.3e-69 267.3 276 54.7
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.7e-69 266.9 276 55.1
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.7e-69 266.9 276 54.0
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 2.2e-69 266.5 276 54.7
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 2.2e-69 266.5 276 52.9
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 2.9e-69 266.2 302 53.6
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 3.8e-69 265.8 276 55.1
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 6.4e-69 265.0 276 55.1
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 6.4e-69 265.0 274 54.0
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 8.4e-69 264.6 283 54.8
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 1.1e-68 264.2 276 53.6
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 1.4e-68 263.8 280 55.4
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 3.2e-68 262.7 273 52.0
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 5.4e-68 261.9 276 54.0
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 5.4e-68 261.9 276 54.0
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.6e-67 260.4 276 54.3
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 2.1e-67 260.0 276 55.1
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 2.1e-67 260.0 276 55.1
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 2.1e-67 260.0 279 54.1
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 3.5e-67 259.2 276 52.9
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 3.5e-67 259.2 276 52.9
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 1.8e-66 256.9 274 55.1
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 3.9e-66 255.8 275 53.8
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 3.9e-66 255.8 280 51.8
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.1e-65 254.2 287 51.2
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 1.1e-65 254.2 360 45.6
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 5.6e-65 251.9 282 51.8
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 7.4e-65 251.5 274 51.5
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 7.4e-65 251.5 238 60.1
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 1.3e-64 250.8 288 51.7
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.3e-64 250.8 379 43.3
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.8e-64 249.6 291 52.6
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.2e-64 248.4 277 51.6
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 8.1e-64 248.1 268 54.9
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 1.1e-63 247.7 282 53.2
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 1.4e-63 247.3 278 52.2
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 3.1e-63 246.1 296 50.0
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.9e-63 245.0 288 51.0
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.6e-62 243.0 285 49.8
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 3.4e-62 242.7 244 56.6
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 4.5e-62 242.3 279 54.1
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 1.2e-59 234.2 272 51.8
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 1.8e-58 230.3 236 53.0
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 5.6e-57 225.3 274 47.4
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 4.0e-55 219.2 230 54.8
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 5.7e-49 198.7 230 47.4
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 2.2e-48 196.8 224 52.7
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.9e-44 183.7 218 48.2
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 4.2e-44 182.6 149 66.4
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 5.5e-44 182.2 231 48.5
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 1.0e-42 177.9 161 62.7
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 3.9e-42 176.0 118 75.4
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.0e-41 173.7 151 64.9
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 4.5e-38 162.5 142 61.3
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 5.9e-38 162.2 230 40.0
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.2e-37 160.2 230 39.6
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 7.2e-36 155.2 170 50.0
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 2.1e-35 153.7 224 40.6
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.7e-32 144.1 219 38.4
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 4.1e-31 139.4 139 54.7
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 4.1e-31 139.4 137 56.9
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 7.7e-30 135.2 230 40.9
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.5e-25 120.9 222 32.0
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 2.0e-25 120.6 214 33.2
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 7.4e-25 118.6 186 38.7
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 7.4e-25 118.6 101 62.4
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 1.3e-24 117.9 216 30.6
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 3.7e-24 116.3 72 77.8
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.1e-23 112.8 74 74.3
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.2e-22 111.3 119 52.9
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 1.2e-19 101.3 228 33.8
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.6e-19 99.8 70 68.6
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 4.7e-19 99.4 117 48.7
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 6.1e-19 99.0 70 67.1
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 8.0e-19 98.6 74 64.9
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.0e-18 98.2 70 65.7
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.8e-15 87.4 55 74.5
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 1.7e-13 80.9 249 24.9
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-10 71.2 96 43.8
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.2e-09 68.2 96 42.7
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 1.1e-07 61.6 200 25.0
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 1.8e-07 60.8 207 28.0
arahy.Tifrunner.gnm1.ann1.4Z64RL Arachis hypogaea HOM05D003972 ORTHO05D082339 5.4e-07 59.3 94 43.6
PRCOL_00001524 Prasinoderma coloniale HOM05D003160 ORTHO05D005967 3.5e-06 56.6 195 24.6
Potri.019G087300 Populus trichocarpa HOM05D003160 ORTHO05D005967 4.5e-06 56.2 204 23.5
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-06 55.8 100 39.0


User provided reference genes

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