Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 4.9e-126 454.5 237 100.0
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 5.6e-106 387.9 242 85.1
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 2.0e-103 379.4 236 85.2
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 3.3e-98 362.1 242 80.6
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 4.3e-98 361.7 242 80.6
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 1.3e-94 350.1 242 78.5
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 9.4e-93 344.0 238 75.6
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 1.0e-91 340.5 236 74.2
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 3.7e-89 332.0 241 75.1
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 1.1e-88 330.5 232 75.4
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 6.9e-88 327.8 251 71.7
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 1.2e-87 327.0 241 72.2
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 3.4e-87 325.5 250 70.8
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 1.3e-86 323.6 241 70.5
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 2.2e-86 322.8 246 70.3
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 2.9e-86 322.4 193 82.9
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 2.9e-86 322.4 244 70.9
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 3.8e-86 322.0 238 71.8
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 5.0e-86 321.6 241 73.0
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 6.5e-86 321.2 243 72.4
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 2.5e-85 319.3 236 72.9
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 4.2e-85 318.5 237 74.7
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 4.2e-85 318.5 211 78.7
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 7.2e-85 317.8 214 75.7
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 1.6e-84 316.6 195 80.0
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 2.1e-84 316.2 239 72.8
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 2.1e-84 316.2 239 72.8
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 2.7e-84 315.8 244 68.9
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 4.7e-84 315.1 239 72.8
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 6.1e-84 314.7 239 72.8
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 7.9e-84 314.3 238 71.8
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 1.4e-83 313.5 237 70.9
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 1.4e-83 313.5 183 81.4
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 1.4e-83 313.5 245 69.4
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 1.4e-83 313.5 181 82.9
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 1.8e-83 313.2 245 66.9
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 2.3e-83 312.8 249 67.1
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 3.9e-83 312.0 238 72.3
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 3.9e-83 312.0 242 69.0
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 3.9e-83 312.0 177 83.1
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 5.1e-83 311.6 240 70.4
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 1.1e-82 310.5 243 67.5
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 2.6e-82 309.3 232 73.3
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 3.3e-82 308.9 238 70.6
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 3.3e-82 308.9 244 69.7
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 4.4e-82 308.5 172 84.9
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 5.7e-82 308.1 244 69.3
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 9.7e-82 307.4 243 67.9
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 9.7e-82 307.4 249 68.7
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 2.2e-81 306.2 243 67.1
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 4.8e-81 305.1 247 66.8
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 6.3e-81 304.7 235 68.1
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 8.2e-81 304.3 185 79.5
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 1.1e-80 303.9 177 80.2
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 1.1e-80 303.9 245 66.5
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 2.4e-80 302.8 185 78.4
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 2.4e-80 302.8 186 78.0
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 3.1e-80 302.4 197 73.6
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 4.1e-80 302.0 186 78.0
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 4.1e-80 302.0 239 68.6
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 5.3e-80 301.6 199 74.4
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 9.1e-80 300.8 245 65.3
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.2e-79 300.4 249 65.9
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 1.2e-79 300.4 248 64.1
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 2.0e-79 299.7 177 79.7
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 2.6e-79 299.3 244 64.8
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 3.5e-79 298.9 237 67.1
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 7.7e-79 297.7 249 65.5
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 1.7e-78 296.6 246 64.6
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 3.8e-78 295.4 171 80.7
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 4.2e-77 292.0 247 64.4
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 7.2e-77 291.2 204 71.1
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 1.2e-76 290.4 242 66.9
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 6.1e-76 288.1 204 70.6
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 1.8e-75 286.6 245 63.7
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 3.0e-75 285.8 244 63.1
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 5.7e-74 281.6 220 72.7
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 1.7e-73 280.0 150 87.3
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 2.2e-73 279.6 239 67.4
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 2.2e-73 279.6 239 67.4
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 3.7e-73 278.9 221 68.3
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 6.3e-73 278.1 244 62.7
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 8.2e-73 277.7 240 64.6
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 8.2e-73 277.7 231 62.3
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 7.0e-72 274.6 247 60.3
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 7.0e-72 274.6 247 60.3
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 1.6e-71 273.5 239 62.3
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 2.6e-71 272.7 222 66.7
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.3e-70 270.4 244 61.1
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 1.5e-69 266.9 250 58.0
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 5.5e-69 265.0 238 60.9
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 9.4e-69 264.2 237 61.6
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 9.4e-69 264.2 195 67.7
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.6e-68 263.5 243 59.7
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 1.6e-68 263.5 207 71.0
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 4.4e-66 255.4 197 62.4
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 5.7e-66 255.0 138 87.7
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 7.5e-66 254.6 172 73.8
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 4.8e-65 251.9 182 65.4
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 4.8e-65 251.9 182 65.4
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 4.8e-65 251.9 183 66.7
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 1.8e-64 250.0 229 56.8
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 4.0e-59 232.3 208 54.3
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 1.5e-58 230.3 133 82.7
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 1.3e-57 227.3 233 52.8
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 4.8e-57 225.3 235 53.6
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 7.7e-55 218.0 132 78.8
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 2.3e-54 216.5 226 51.8
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 1.3e-46 190.7 124 73.4
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 2.5e-45 186.4 124 75.8
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 1.0e-43 181.0 120 70.0
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 3.9e-38 162.5 105 77.1
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 3.4e-26 122.9 170 40.6
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 4.6e-23 112.5 87 67.8
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 1.4e-19 100.9 234 31.6
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 4.9e-17 92.4 173 34.7
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 5.3e-11 72.4 55 61.8
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 2.9e-09 66.6 151 29.1
DCAR_031498 Daucus carota HOM05D006773 ORTHO05D008775 1.4e-08 64.3 152 30.9
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 2.4e-08 63.5 151 27.8
Lj7C363G2 Lonicera japonica HOM05D006773 ORTHO05D008775 2.4e-08 63.5 151 29.1
Oeu025718.1 Olea europaea HOM05D006773 ORTHO05D008775 3.2e-08 63.2 151 28.5
QL09p028661 Quercus lobata HOM05D006773 ORTHO05D008775 5.4e-08 62.4 151 29.8
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 7.1e-08 62.0 152 28.3
Lsat_1_v5_gn_6_96860 Lactuca sativa HOM05D006773 ORTHO05D008775 9.3e-08 61.6 147 27.9
Cc10_g12990 Coffea canephora HOM05D006773 ORTHO05D008775 1.2e-07 61.2 152 27.6
MSTRG.22383 Avicennia marina HOM05D006773 ORTHO05D008775 1.6e-07 60.8 152 27.0
MBI06_g35966_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 1.6e-07 60.8 150 29.3
Nitab4.5_0004095g0010 Nicotiana tabacum HOM05D006773 ORTHO05D008775 2.1e-07 60.5 151 27.8
Dinv25798 Davidia involucrata HOM05D006773 ORTHO05D008775 2.7e-07 60.1 151 28.5
Solyc04g064670.3 Solanum lycopersicum HOM05D006773 ORTHO05D008775 2.7e-07 60.1 151 27.8
Sopen04g026630 Solanum pennellii HOM05D006773 ORTHO05D008775 2.7e-07 60.1 151 27.8
PGSC0003DMG401024815 Solanum tuberosum HOM05D006773 ORTHO05D008775 2.7e-07 60.1 151 27.8
Ciclev10002228m.g Citrus clementina HOM05D006773 ORTHO05D008775 3.5e-07 59.7 151 29.1
Nitab4.5_0000445g0090 Nicotiana tabacum HOM05D006773 ORTHO05D008775 3.5e-07 59.7 151 27.2
Peaxi162Scf00263g00028 Petunia axillaris HOM05D006773 ORTHO05D008775 3.5e-07 59.7 151 27.8
Ah.16g108660 Amaranthus hybridus HOM05D006773 ORTHO05D008775 4.6e-07 59.3 152 27.0
ATR1136G180 Amborella trichopoda HOM05D006773 ORTHO05D008775 4.6e-07 59.3 152 27.0
CiPaw.15G022300 Carya illinoinensis HOM05D006773 ORTHO05D008775 4.6e-07 59.3 147 29.3
MBI06_g41413_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 4.6e-07 59.3 150 29.3
Eucgr.F02746 Eucalyptus grandis HOM05D006773 ORTHO05D008775 6.0e-07 58.9 152 29.6
MD10G1012400 Malus domestica HOM05D006773 ORTHO05D008775 6.0e-07 58.9 147 26.5
MCO12G188 Micromonas commoda HOM05D006848 ORTHO05D008445 6.0e-07 58.9 184 29.3
Migut.N03240 Erythranthe guttata HOM05D006773 ORTHO05D008775 7.9e-07 58.5 152 25.7
Thecc.08G143200 Theobroma cacao HOM05D006773 ORTHO05D008775 7.9e-07 58.5 151 26.5
arahy.Tifrunner.gnm1.ann1.61R3GI Arachis hypogaea HOM05D006773 ORTHO05D008775 1.0e-06 58.2 151 27.8
CAN.G2.47 Capsicum annuum HOM05D006773 ORTHO05D008775 1.0e-06 58.2 151 27.8
Nn5g28592 Nelumbo nucifera HOM05D006773 ORTHO05D008775 1.3e-06 57.8 150 28.0
SMO270G0074 Selaginella moellendorffii HOM05D006773 ORTHO05D008775 1.3e-06 57.8 150 28.7
Sc20g0003340 Simmondsia chinensis HOM05D006773 ORTHO05D008775 1.3e-06 57.8 152 27.0
Atru.chr13.1690 Acer truncatum HOM05D006773 ORTHO05D008775 1.7e-06 57.4 151 27.2
MD05G1012500 Malus domestica HOM05D006773 ORTHO05D008775 1.7e-06 57.4 147 26.5
Cfa018374 Carpinus fangiana HOM05D006773 ORTHO05D008775 2.3e-06 57.0 151 27.2
ClCG09G009710 Citrullus lanatus HOM05D006773 ORTHO05D008775 2.3e-06 57.0 152 28.3
Duzib093G1219 Durio zibethinus HOM05D006773 ORTHO05D008775 2.3e-06 57.0 151 26.5
SGA_v2.0_scaffold19G08634 Striga asiatica HOM05D006773 ORTHO05D008775 2.3e-06 57.0 147 26.5
arahy.Tifrunner.gnm1.ann1.85NLUF Arachis hypogaea HOM05D006773 ORTHO05D008775 3.0e-06 56.6 151 27.8
CANSAT25G3413 Cannabis sativa HOM05D006773 ORTHO05D008775 3.0e-06 56.6 151 28.5
Sed0012245 Sechium edule HOM05D006773 ORTHO05D008775 3.0e-06 56.6 152 27.6
THA.LOC104813693 Tarenaya hassleriana HOM05D006773 ORTHO05D008775 3.9e-06 56.2 151 27.2
HPP92_004476 Vanilla planifolia HOM05D006773 ORTHO05D008775 3.9e-06 56.2 146 28.8
GSVIVG01010018001 Vitis vinifera HOM05D006773 ORTHO05D008775 3.9e-06 56.2 151 28.5
unitig_52.g17539 Utricularia gibba HOM05D006773 ORTHO05D008775 5.1e-06 55.8 152 26.3
vmacro00729 Vaccinium macrocarpon HOM05D006773 ORTHO05D008775 5.1e-06 55.8 147 25.9
FvH4_2g14791 Fragaria vesca HOM05D006773 ORTHO05D008775 6.6e-06 55.5 151 27.8
FAN15G2829 Fragaria x ananassa HOM05D006773 ORTHO05D008775 6.6e-06 55.5 151 27.8
RcHm_v2.0_Chr6g0277361 Rosa chinensis HOM05D006773 ORTHO05D008775 6.6e-06 55.5 147 25.9
CBR_g39641 Chara braunii HOM05D006773 ORTHO05D008775 8.7e-06 55.1 55 43.6
Haze_17696 Corylus avellana HOM05D006773 ORTHO05D005980 8.7e-06 55.1 151 25.2
CsaV3_7G025030 Cucumis sativus L. HOM05D006773 ORTHO05D008775 8.7e-06 55.1 151 25.8
Manes.02G174300 Manihot esculenta HOM05D006773 ORTHO05D008775 8.7e-06 55.1 151 27.2
Rhsim09G0002200 Rhododendron simsii HOM05D006773 ORTHO05D008775 8.7e-06 55.1 147 25.9


User provided reference genes

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