Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 4.6e-205 717.6 350 100.0
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.1e-174 616.7 394 78.7
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.7e-162 576.2 394 73.4
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.7e-162 576.2 394 73.9
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 6.3e-162 574.3 394 73.6
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.1e-161 571.6 394 73.4
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.1e-153 547.0 385 73.2
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.7e-144 515.8 392 65.6
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 2.9e-143 512.3 377 65.5
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 3.2e-142 508.8 396 64.9
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 1.6e-141 506.5 382 65.7
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.6e-141 506.5 378 66.7
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 6.1e-141 504.6 387 65.1
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 8.0e-141 504.2 392 67.9
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 8.0e-141 504.2 387 65.1
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.4e-140 503.4 387 64.9
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 3.0e-140 502.3 394 64.5
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.2e-140 501.5 387 64.9
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 6.8e-140 501.1 371 67.1
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 1.5e-139 500.0 403 62.5
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 4.4e-139 498.4 388 63.7
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 5.7e-139 498.0 384 64.1
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 7.5e-139 497.7 403 62.3
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 7.5e-139 497.7 395 63.8
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 9.8e-139 497.3 388 63.7
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 2.8e-138 495.7 389 64.3
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 3.7e-138 495.4 395 63.3
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 6.3e-138 494.6 371 66.3
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.1e-137 493.8 399 62.7
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.8e-137 493.0 400 62.2
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 2.4e-137 492.7 417 62.6
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.1e-137 491.9 380 64.5
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 4.1e-137 491.9 406 62.1
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 1.6e-136 490.0 429 59.9
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 2.0e-136 489.6 378 63.8
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 7.7e-136 487.6 390 61.5
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 1.0e-135 487.3 384 62.2
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.0e-135 487.3 399 61.7
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.7e-135 486.5 385 63.6
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.7e-135 486.5 393 62.8
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.3e-135 486.1 391 63.2
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.3e-135 486.1 396 62.9
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 3.8e-135 485.3 388 62.9
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 5.0e-135 485.0 413 60.3
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-134 483.8 388 62.9
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.1e-134 483.8 384 62.2
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 1.1e-134 483.8 400 61.8
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-134 483.0 389 63.0
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.9e-134 483.0 389 63.0
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.9e-134 483.0 382 62.3
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.9e-134 483.0 383 62.7
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 2.5e-134 482.6 388 62.9
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 2.5e-134 482.6 386 63.0
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 7.2e-134 481.1 387 62.8
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.1e-133 479.6 375 63.7
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.1e-133 479.6 392 59.7
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 2.8e-133 479.2 384 62.0
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 3.6e-133 478.8 376 63.0
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 4.7e-133 478.4 384 63.5
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.0e-132 475.7 365 64.9
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.0e-132 475.7 399 60.4
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 4.0e-132 475.3 382 63.1
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 4.0e-132 475.3 397 61.2
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 5.2e-132 474.9 388 62.4
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 5.2e-132 474.9 385 62.1
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 5.2e-132 474.9 388 62.4
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 6.8e-132 474.6 383 61.1
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 8.9e-132 474.2 392 61.0
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 1.2e-131 473.8 371 63.9
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 2.6e-131 472.6 373 62.7
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 4.4e-131 471.9 391 61.6
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 5.7e-131 471.5 382 60.2
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 9.8e-131 470.7 373 63.0
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.3e-130 470.3 371 63.6
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 1.7e-130 469.9 382 59.9
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 1.7e-130 469.9 393 61.3
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 3.7e-130 468.8 367 62.4
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 6.3e-130 468.0 383 62.7
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 8.3e-130 467.6 382 59.7
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.2e-129 464.2 385 62.9
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 2.7e-128 462.6 394 59.6
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 3.5e-128 462.2 366 61.5
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 7.8e-128 461.1 375 61.9
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.0e-127 460.7 366 62.0
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.0e-127 460.7 379 61.7
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 5.0e-127 458.4 379 60.9
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 5.0e-127 458.4 379 60.9
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.9e-126 456.4 368 63.6
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.5e-126 456.1 371 63.3
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 4.7e-125 451.8 353 64.0
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 2.3e-124 449.5 367 60.2
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 2.3e-124 449.5 371 59.8
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.7e-122 443.4 381 58.3
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 3.2e-121 439.1 378 58.5
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.0e-119 434.1 379 57.8
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 2.1e-117 426.4 452 50.0
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.8e-117 426.0 370 58.6
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.3e-116 422.9 389 55.8
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.4e-115 419.1 367 55.9
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 7.5e-115 417.9 398 57.3
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 9.8e-115 417.5 383 54.6
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 2.9e-114 416.0 394 53.6
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 6.4e-114 414.8 262 73.7
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 8.3e-114 414.5 256 73.8
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.7e-111 406.8 337 61.7
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.9e-110 403.3 386 54.9
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.1e-108 397.5 399 50.9
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.4e-108 397.1 399 50.9
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.8e-108 396.7 266 69.5
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 2.3e-108 396.4 377 53.1
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 4.4e-107 392.1 362 54.4
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 4.3e-102 375.6 253 69.2
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.4e-100 369.8 369 50.4
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.2e-99 367.5 247 68.8
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.5e-99 367.1 246 68.7
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 6.4e-98 361.7 244 68.0
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 4.2e-97 359.0 378 49.7
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 7.1e-97 358.2 241 69.3
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 7.8e-96 354.8 374 47.6
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.1e-94 350.9 403 49.9
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 4.3e-94 349.0 242 69.0
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 1.6e-93 347.1 376 46.5
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 8.1e-93 344.7 291 58.8
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.5e-91 340.5 286 59.4
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 9.9e-91 337.8 286 58.7
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 4.2e-89 332.4 367 47.7
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 9.3e-89 331.3 254 67.7
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 3.3e-86 322.8 371 49.6
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 6.4e-82 308.5 365 43.6
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.1e-81 307.8 192 73.4
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 7.1e-81 305.1 378 45.8
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 3.3e-70 269.6 303 46.5
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 4.8e-69 265.8 245 55.9
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 1.4e-68 264.2 243 57.2
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 2.6e-67 260.0 158 75.3
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 7.6e-67 258.5 285 54.0
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.1e-65 254.6 360 41.1
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 6.5e-50 202.2 132 72.7
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.2e-40 171.4 114 68.4
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.6e-40 171.0 207 50.7
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.5e-35 153.3 208 39.9
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 5.9e-35 152.5 379 31.9
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.9e-33 147.5 106 65.1
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 1.6e-32 144.4 171 48.0
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 7.5e-30 135.6 174 46.0
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 3.8e-26 123.2 349 28.1
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 7.2e-25 119.0 99 57.6
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.5e-22 111.3 137 43.1
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-20 105.1 70 62.9
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.4e-20 104.8 93 58.1
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 5.9e-19 99.4 93 54.8
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 6.6e-18 95.9 93 53.8
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 8.6e-18 95.5 94 48.9
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 5.2e-15 86.3 126 42.9
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 8.9e-15 85.5 269 26.8
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 5.4e-12 76.3 48 66.7
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 2.9e-10 70.5 52 61.5
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 3.3e-09 67.0 55 56.4
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.6e-08 63.5 59 49.2
MELO3C035473.2 Cucumis melo HOM05D040713 ORTHO05D005180 5.2e-07 59.7 45 68.9


User provided reference genes

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