Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.8e-51 205.7 106 100.0
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 1.2e-36 156.4 105 78.1
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 3.2e-24 115.2 105 62.9
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 4.1e-24 114.8 105 64.8
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 9.2e-24 113.6 105 61.9
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.7e-23 112.1 105 61.9
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.7e-15 85.5 96 51.0
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 1.3e-14 83.2 117 47.0
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 2.3e-14 82.4 116 48.3
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 6.6e-14 80.9 89 56.2
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 1.9e-13 79.3 101 52.5
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.5e-13 79.0 109 51.4
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.3e-13 78.2 109 50.5
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 5.6e-13 77.8 107 51.4
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 9.5e-13 77.0 101 49.5
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 3.6e-12 75.1 104 51.0
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 3.6e-12 75.1 92 50.0
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 3.6e-12 75.1 66 59.1
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 4.7e-12 74.7 68 55.9
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 8.1e-12 73.9 86 52.3
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 8.1e-12 73.9 114 48.2
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.4e-11 73.2 104 50.0
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 1.8e-11 72.8 52 71.2
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 2.3e-11 72.4 59 61.0
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 3.1e-11 72.0 108 50.9
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 3.1e-11 72.0 109 45.0
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 5.2e-11 71.2 97 49.5
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 8.9e-11 70.5 52 73.1
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 1.2e-10 70.1 101 47.5
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 1.2e-10 70.1 109 46.8
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 1.5e-10 69.7 113 43.4
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 1.5e-10 69.7 71 53.5
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 2.0e-10 69.3 101 46.5
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 2.6e-10 68.9 101 48.5
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 4.4e-10 68.2 107 43.0
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.4e-10 68.2 83 50.6
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 5.8e-10 67.8 102 48.0
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.6e-10 67.4 78 53.8
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.6e-10 67.4 78 53.8
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.6e-10 67.4 78 53.8
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.6e-10 67.4 78 53.8
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 7.6e-10 67.4 111 45.0
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 9.9e-10 67.0 93 50.5
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 9.9e-10 67.0 101 47.5
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 9.9e-10 67.0 105 45.7
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 9.9e-10 67.0 52 71.2
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 1.3e-09 66.6 56 69.6
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.3e-09 66.6 71 53.5
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 1.7e-09 66.2 93 44.1
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 2.2e-09 65.9 105 43.8
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.2e-09 65.9 67 53.7
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 2.9e-09 65.5 56 64.3
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 2.9e-09 65.5 109 46.8
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 2.9e-09 65.5 60 60.0
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 3.8e-09 65.1 68 51.5
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 3.8e-09 65.1 55 65.5
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 4.9e-09 64.7 56 64.3
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 6.4e-09 64.3 72 52.8
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.1e-08 63.5 91 45.1
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 1.1e-08 63.5 45 68.9
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 1.1e-08 63.5 55 61.8
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.4e-08 63.2 91 44.0
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 1.4e-08 63.2 90 46.7
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.4e-08 62.4 67 50.7
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 2.4e-08 62.4 124 41.1
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 3.2e-08 62.0 105 41.9
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 4.1e-08 61.6 100 44.0
Thhalv10027121m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 4.1e-08 61.6 71 49.3
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 5.4e-08 61.2 86 47.7
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 9.2e-08 60.5 76 47.4
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 9.2e-08 60.5 76 47.4
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 9.2e-08 60.5 76 47.4
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 9.2e-08 60.5 76 47.4
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 1.2e-07 60.1 90 44.4
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 1.2e-07 60.1 90 44.4
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 2.7e-07 58.9 109 37.6
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 6.0e-07 57.8 53 60.4
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 6.0e-07 57.8 101 43.6
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.3e-06 56.6 41 70.7
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 1.7e-06 56.2 53 58.5
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 1.7e-06 56.2 53 58.5
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 2.3e-06 55.8 55 60.0
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 3.9e-06 55.1 63 50.8
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 3.9e-06 55.1 52 57.7
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 3.9e-06 55.1 111 44.1
Prupe.5G082400 Prunus persica HOM05D005851 ORTHO05D007137 3.9e-06 55.1 88 44.3
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 5.1e-06 54.7 45 62.2
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 5.1e-06 54.7 104 38.5
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 6.6e-06 54.3 57 56.1
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 6.6e-06 54.3 117 36.8
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 8.6e-06 53.9 59 52.5


User provided reference genes

Program Settings