Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 3.5e-100 368.2 178 100.0
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 4.4e-79 298.1 178 80.3
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.9e-77 292.7 171 79.5
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 4.1e-77 291.6 171 79.5
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 5.4e-77 291.2 171 80.1
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 2.1e-76 289.3 171 79.5
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 5.1e-75 284.6 167 79.0
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.4e-72 276.6 164 78.0
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.4e-72 276.6 164 78.0
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 5.2e-72 274.6 166 78.3
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.2e-71 273.5 177 72.9
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 2.6e-71 272.3 172 74.4
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.4e-71 271.9 175 75.4
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 9.9e-71 270.4 163 76.7
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.7e-70 269.6 164 76.2
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.7e-70 269.6 171 72.5
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 6.4e-70 267.7 172 72.7
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 5.4e-69 264.6 164 74.4
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 7.1e-69 264.2 176 73.3
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 9.2e-69 263.8 162 75.9
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.6e-68 263.1 162 75.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 3.5e-68 261.9 163 74.8
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.5e-68 261.9 164 74.4
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.6e-68 261.5 173 71.1
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 7.8e-68 260.8 172 73.3
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 7.8e-68 260.8 166 74.1
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.7e-67 259.6 169 75.1
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 2.3e-67 259.2 176 70.5
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 3.9e-67 258.5 174 69.5
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.9e-67 258.5 172 73.3
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 3.9e-67 258.5 168 74.4
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 8.6e-67 257.3 168 72.0
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.1e-66 256.9 167 73.1
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.1e-66 256.9 175 69.7
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.5e-66 255.8 167 73.1
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 7.3e-66 254.2 166 71.7
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.6e-65 253.1 180 70.0
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 2.1e-65 252.7 168 70.8
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.1e-65 252.7 165 73.3
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.1e-65 252.7 172 69.8
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 2.8e-65 252.3 167 71.9
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 3.6e-65 251.9 173 70.5
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 4.7e-65 251.5 176 70.5
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 4.7e-65 251.5 164 72.0
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 8.1e-65 250.8 163 72.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.1e-64 250.4 167 71.9
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.4e-64 250.0 169 68.6
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.4e-64 250.0 173 71.1
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.8e-64 249.6 166 70.5
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 3.1e-64 248.8 164 72.6
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 5.2e-64 248.1 175 70.9
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.2e-63 246.9 169 68.6
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.2e-63 246.9 163 71.8
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 2.0e-63 246.1 164 70.7
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.0e-63 246.1 164 70.7
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 4.4e-63 245.0 165 71.5
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 5.8e-63 244.6 167 71.3
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 7.6e-63 244.2 164 72.0
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 8.4e-62 240.7 162 70.4
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 8.4e-62 240.7 174 67.8
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.1e-61 240.4 175 66.9
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.4e-61 239.2 164 68.9
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 3.2e-61 238.8 170 69.4
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.2e-61 238.4 164 68.3
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 4.6e-60 235.0 167 69.5
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 7.8e-60 234.2 164 68.9
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 7.8e-60 234.2 165 69.7
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.7e-59 233.0 165 66.7
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.3e-59 232.6 167 67.1
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.0e-59 232.3 177 63.8
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 8.7e-59 230.7 163 67.5
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 8.7e-59 230.7 161 66.5
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 8.7e-59 230.7 164 68.9
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.9e-58 229.6 177 64.4
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.9e-58 229.6 177 63.8
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 4.3e-58 228.4 167 68.3
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 5.6e-58 228.0 177 65.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 5.6e-58 228.0 177 65.0
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.6e-58 228.0 153 71.9
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 7.3e-58 227.6 164 64.6
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.3e-57 226.9 165 66.1
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.3e-57 226.9 165 66.1
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.3e-57 226.9 162 67.9
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.3e-57 226.9 167 61.1
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.8e-57 225.7 165 67.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 3.6e-57 225.3 174 59.8
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 3.6e-57 225.3 194 60.3
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 8.1e-57 224.2 161 67.7
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.8e-56 223.0 173 60.1
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.4e-56 222.6 172 62.8
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 5.3e-56 221.5 173 59.5
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 5.3e-56 221.5 151 70.2
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 6.9e-56 221.1 186 59.1
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 9.0e-56 220.7 162 66.7
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-55 220.3 160 66.2
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.6e-55 219.2 161 63.4
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.6e-55 219.2 181 60.8
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 5.8e-55 218.0 157 66.9
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.4e-53 213.4 167 59.3
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 4.2e-53 211.8 168 58.9
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 9.3e-53 210.7 164 62.2
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.6e-52 209.9 174 57.5
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.0e-52 208.0 177 58.8
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.1e-50 203.8 184 56.0
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 3.3e-50 202.2 175 56.0
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 4.3e-50 201.8 122 76.2
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 7.4e-50 201.1 169 58.6
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 9.6e-50 200.7 168 61.9
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 2.0e-47 193.0 165 57.0
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.3e-46 190.3 165 57.0
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 2.2e-46 189.5 117 73.5
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 6.4e-46 188.0 118 72.9
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.2e-44 183.7 165 52.1
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.3e-43 180.3 118 72.0
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.3e-43 180.3 112 70.5
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.8e-41 172.6 164 50.0
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 6.2e-41 171.4 128 68.0
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.4e-40 170.2 179 48.6
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-40 170.2 165 49.1
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.8e-40 169.9 158 50.6
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.5e-39 166.8 165 49.1
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.5e-38 161.4 150 52.7
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.7e-36 156.0 128 63.3
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.3e-33 144.8 134 50.7
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.4e-32 143.7 165 44.2
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.7e-30 136.7 85 71.8
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-30 136.0 165 42.4
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.0e-30 135.2 123 52.8
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 1.1e-29 134.0 165 45.5
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.1e-28 129.8 100 63.0
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 4.6e-28 128.6 171 43.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 5.0e-22 108.6 188 35.1
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.5e-21 106.3 70 67.1
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.2e-20 104.0 111 46.8
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.0e-19 99.4 85 50.6
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 2.1e-12 76.6 54 72.2
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 4.4e-10 68.9 55 63.6
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.8e-09 66.2 56 62.5
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 3.7e-09 65.9 41 75.6
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.2e-09 64.7 53 54.7
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.8e-08 63.5 41 70.7


User provided reference genes

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