Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 1.2e-38 165.2 223 100.0
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 1.0e-32 145.6 223 95.1
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.5e-28 131.7 223 71.3
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.2e-27 127.9 223 61.4
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 6.1e-22 109.8 223 35.0
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 9.7e-20 102.4 223 58.7
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 1.3e-19 102.1 230 52.2
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 2.2e-19 101.3 223 60.1
Gohir.D02G157000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.4e-18 97.8 55 83.6
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 4.1e-18 97.1 223 53.8
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 7.0e-18 96.3 223 69.5
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 4.5e-17 93.6 223 55.2
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 8.5e-16 89.4 223 83.4
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 1.1e-15 89.0 46 82.6
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 9.4e-15 85.9 46 78.3
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 1.2e-14 85.5 215 82.3
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 4.7e-14 83.6 47 80.9
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 4.7e-14 83.6 43 81.4
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 4.7e-14 83.6 223 80.7
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 1.0e-13 82.4 48 79.2
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 1.4e-13 82.0 223 82.1
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 1.8e-13 81.6 46 78.3
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 2.3e-13 81.3 45 80.0
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 4.0e-13 80.5 47 72.3
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 6.7e-13 79.7 47 78.7
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 1.5e-12 78.6 223 81.2
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 2.0e-12 78.2 223 79.8
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 3.3e-12 77.4 223 67.3
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 9.7e-12 75.9 48 70.8
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 1.3e-11 75.5 48 75.0
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 2.8e-11 74.3 48 72.9
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 3.7e-11 73.9 48 72.9
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 4.8e-11 73.6 53 64.2
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 6.3e-11 73.2 43 76.7
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 6.3e-11 73.2 43 76.7
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 8.2e-11 72.8 45 75.6
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 8.2e-11 72.8 48 68.8
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 8.2e-11 72.8 54 61.1
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 1.1e-10 72.4 54 57.4
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 1.8e-10 71.6 48 66.7
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 2.4e-10 71.2 54 55.6
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 2.4e-10 71.2 54 55.6
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 2.4e-10 71.2 54 55.6
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 2.4e-10 71.2 54 55.6
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 2.4e-10 71.2 54 55.6
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 3.1e-10 70.9 45 66.7
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 4.1e-10 70.5 54 55.6
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 4.1e-10 70.5 54 55.6
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 4.1e-10 70.5 47 70.2
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 4.1e-10 70.5 47 59.6
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 7.0e-10 69.7 54 55.6
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 7.0e-10 69.7 48 64.6
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 9.1e-10 69.3 48 66.7
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 2.0e-09 68.2 51 56.9
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 2.0e-09 68.2 51 56.9
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.0e-09 68.2 47 63.8
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 2.7e-09 67.8 34 82.4
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 4.5e-09 67.0 53 54.7
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 1.0e-08 65.9 50 58.0
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 1.0e-08 65.9 47 66.0
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 1.0e-08 65.9 43 72.1
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 1.3e-08 65.5 48 62.5
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 1.3e-08 65.5 51 52.9
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 1.7e-08 65.1 45 57.8
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 2.9e-08 64.3 46 58.7
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 5.0e-08 63.5 48 56.2
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 8.5e-08 62.8 41 70.7
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 8.5e-08 62.8 47 59.6
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 1.9e-07 61.6 33 78.8
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 7.2e-07 59.7 47 59.6
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 9.4e-07 59.3 28 89.3
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 9.4e-07 59.3 33 78.8
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 9.4e-07 59.3 33 78.8
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 8.0e-06 56.2 32 71.9


User provided reference genes

Program Settings