Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 0.0e+00 1171.0 620 100.0
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 3.3e-238 828.6 636 72.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 3.5e-216 755.4 635 69.1
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.8e-213 745.0 636 67.5
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 5.1e-207 724.9 669 64.0
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.5e-203 713.4 636 65.6
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.4e-135 487.6 649 49.9
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 6.8e-135 485.3 678 48.2
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 6.8e-135 485.3 640 49.8
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.3e-133 481.1 659 50.5
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 4.9e-133 479.2 645 49.1
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.9e-133 479.2 712 48.2
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.2e-128 464.5 672 47.0
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 8.1e-128 461.8 644 48.0
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.1e-128 461.8 695 45.3
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.7e-125 454.1 668 46.0
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 4.9e-125 452.6 667 45.7
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.4e-124 451.1 654 46.8
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 7.1e-124 448.7 710 43.8
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.2e-123 448.0 663 47.4
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 7.8e-123 445.3 655 47.2
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.0e-122 444.9 696 44.5
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.3e-122 444.5 653 47.3
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.3e-122 444.5 642 45.2
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.3e-122 443.7 683 45.4
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.5e-121 441.0 692 44.4
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 9.5e-121 438.3 705 44.5
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 3.6e-120 436.4 692 43.9
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.4e-118 429.5 653 45.9
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.2e-117 427.2 687 44.4
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 5.4e-116 422.5 660 45.6
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 7.8e-115 418.7 635 46.0
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.3e-114 417.9 662 44.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.7e-114 417.5 677 43.9
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.1e-114 416.0 693 42.1
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 3.3e-113 413.3 701 42.2
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.7e-112 409.5 627 45.1
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 4.4e-110 402.9 660 42.9
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.9e-109 400.2 679 44.3
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.8e-109 399.8 587 45.8
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 6.4e-109 399.1 725 41.1
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 5.4e-108 396.0 712 41.6
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 4.6e-107 392.9 683 41.4
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.7e-106 391.0 672 41.8
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 3.9e-106 389.8 685 42.9
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 8.7e-106 388.7 674 42.4
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.6e-104 384.4 654 42.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.6e-104 383.3 659 42.6
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.4e-103 381.3 655 43.2
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 5.8e-102 375.9 684 40.8
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.3e-101 374.8 715 41.0
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 7.9e-99 365.5 718 38.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 5.6e-97 359.4 661 40.7
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 9.6e-97 358.6 646 40.7
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.3e-96 358.2 719 38.7
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.6e-96 357.8 654 40.5
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 3.1e-95 353.6 697 39.3
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-94 351.7 631 42.0
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 5.8e-94 349.4 738 37.4
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 2.2e-93 347.4 642 39.9
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 4.9e-93 346.3 640 39.8
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 3.2e-92 343.6 665 39.7
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 4.6e-91 339.7 649 38.8
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 3.0e-90 337.0 652 39.6
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.9e-90 336.7 770 36.1
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.9e-90 336.7 658 38.8
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 6.7e-90 335.9 651 39.0
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.5e-89 334.0 649 39.1
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.1e-88 330.9 665 38.3
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.1e-87 328.6 802 33.9
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.4e-87 328.2 649 38.1
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.8e-87 327.8 641 38.7
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 3.1e-87 327.0 678 37.2
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.0e-87 326.6 706 37.1
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 4.0e-87 326.6 643 39.0
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.0e-86 324.3 657 38.7
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 3.4e-86 323.6 804 35.0
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.0e-85 322.0 639 38.2
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.4e-84 318.2 645 38.1
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.5e-84 317.4 708 37.9
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 7.1e-84 315.8 771 34.9
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.7e-83 313.9 585 39.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.6e-83 313.2 645 38.1
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 3.1e-79 300.4 542 40.6
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.0e-77 295.4 671 36.1
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 6.5e-77 292.7 811 33.3
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.4e-76 291.6 651 35.5
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.9e-76 291.2 720 34.0
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 5.5e-76 289.7 668 35.3
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.3e-76 288.9 649 38.1
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 2.7e-75 287.3 691 34.7
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 7.9e-75 285.8 694 34.6
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.0e-74 285.4 628 37.3
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 3.0e-74 283.9 673 37.0
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 5.7e-73 279.6 853 30.5
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 3.1e-71 273.9 655 36.0
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 4.1e-71 273.5 704 35.5
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.9e-69 267.3 857 30.1
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 6.5e-69 266.2 649 34.2
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 7.2e-68 262.7 530 40.2
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 7.2e-68 262.7 747 34.0
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.7e-67 260.8 743 32.7
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 6.7e-66 256.1 643 33.9
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.2e-64 251.1 819 31.0
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 6.3e-64 249.6 620 35.8
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.5e-62 243.4 873 29.8
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.0e-61 242.3 608 36.8
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.6e-59 233.8 925 27.8
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.3e-58 231.1 558 37.6
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 6.7e-58 229.6 696 31.9
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.1e-57 228.8 692 30.9
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.5e-57 228.4 628 35.0
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 2.6e-57 227.6 688 31.5
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.7e-56 224.9 620 32.6
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.7e-56 223.8 621 33.0
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.1e-55 222.2 551 33.8
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 3.2e-52 210.7 618 33.3
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 2.3e-50 204.5 663 31.8
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 3.7e-48 197.2 618 34.0
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.6e-46 191.8 823 27.9
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-43 182.2 449 36.3
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.1e-43 181.4 178 59.6
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.1e-43 181.4 619 31.7
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 6.8e-42 176.4 606 30.9
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.2e-41 175.6 307 43.0
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.5e-41 175.3 627 32.5
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.7e-40 171.8 549 32.2
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 5.4e-39 166.8 439 36.4
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.5e-38 164.1 538 33.5
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 6.5e-37 159.8 835 26.3
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 5.5e-36 156.8 370 38.9
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 2.8e-35 154.5 608 31.6
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 6.8e-34 149.8 207 43.5
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.4e-33 147.5 156 51.3
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 8.3e-32 142.9 180 51.7
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.2e-30 139.0 351 35.6
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 2.7e-30 137.9 351 35.0
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 7.8e-30 136.3 783 25.8
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.7e-29 135.2 261 36.8
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 2.8e-27 127.9 456 31.8
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.4e-26 125.6 669 26.5
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 2.3e-26 124.8 329 35.0
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 6.8e-26 123.2 357 34.5
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 5.7e-25 120.2 362 33.4
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 7.5e-25 119.8 323 35.0
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.4e-23 115.5 162 46.3
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 9.5e-20 102.8 119 53.8
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.1e-19 101.7 119 45.4
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.5e-17 95.5 82 54.9
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 2.6e-17 94.7 151 41.1
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.3e-16 92.4 470 28.5
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 4.9e-16 90.5 110 44.5
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 6.4e-16 90.1 143 41.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.1e-15 87.4 63 71.4
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 9.2e-15 86.3 102 50.0
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 4.6e-14 84.0 650 24.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-13 82.8 589 26.3
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 3.0e-13 81.3 57 66.7
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.6e-13 79.7 97 49.5
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.5e-12 79.0 97 49.5
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.1e-11 75.1 504 26.4
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 2.8e-11 74.7 81 51.9
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 1.4e-10 72.4 264 34.8
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 5.2e-10 70.5 90 43.3
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.2e-09 69.3 85 42.4
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 4.9e-08 63.9 114 35.1
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 4.1e-07 60.8 98 43.9


User provided reference genes

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