Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23344 Corchorus olitorius HOM05D007613 ORTHO05D009344 4.7e-48 194.1 93 100.0
Thecc.01G300700 Theobroma cacao HOM05D007613 ORTHO05D009344 1.6e-35 152.5 90 75.6
Duzib133G0913 Durio zibethinus HOM05D007613 ORTHO05D009344 2.3e-34 148.7 90 74.4
Cpa.g.sc9.260 Carica papaya HOM05D000286 ORTHO05D000170 3.9e-34 147.9 90 70.0
CiPaw.07G109200 Carya illinoinensis HOM05D007613 ORTHO05D009344 8.6e-34 146.7 90 70.0
Potri.014G128900 Populus trichocarpa HOM05D007613 ORTHO05D009344 8.6e-34 146.7 90 72.2
Ciclev10022836m.g Citrus clementina HOM05D007613 ORTHO05D009344 1.2e-32 142.9 90 70.0
CARHR173140 Cardamine hirsuta HOM05D007613 ORTHO05D009344 3.6e-32 141.4 92 67.4
THA.LOC104798831 Tarenaya hassleriana HOM05D007613 ORTHO05D009344 3.6e-32 141.4 90 67.8
Thhalv10006304m.g Eutrema salsugineum HOM05D007613 ORTHO05D009344 4.7e-32 141.0 92 67.4
AT3G62880 Arabidopsis thaliana HOM05D007613 ORTHO05D009344 1.1e-31 139.8 92 66.3
Aa31LG10G16510 Aethionema arabicum HOM05D007613 ORTHO05D009344 2.3e-31 138.7 92 64.1
Sp5g00640 Schrenkiella parvula HOM05D007613 ORTHO05D009344 3.1e-31 138.3 92 64.1
AL5G45650 Arabidopsis lyrata HOM05D007613 ORTHO05D009344 4.0e-31 137.9 92 64.1
CsaV3_7G029280 Cucumis sativus L. HOM05D007613 ORTHO05D009344 5.2e-31 137.5 90 66.7
MELO3C016000.2 Cucumis melo HOM05D007613 ORTHO05D009344 6.8e-31 137.1 90 66.7
BraA04t15767Z Brassica rapa HOM05D007613 ORTHO05D009344 1.5e-30 136.0 92 64.1
Eucgr.H01109 Eucalyptus grandis HOM05D007613 ORTHO05D009344 3.4e-30 134.8 90 65.6
C04p30380 Brassica napus HOM05D007613 ORTHO05D009344 4.4e-30 134.4 92 63.0
BolC4t24569H Brassica oleracea HOM05D007613 ORTHO05D009344 4.4e-30 134.4 92 63.0
Glyma.10G018300 Glycine max HOM05D007613 ORTHO05D009344 4.4e-30 134.4 92 64.1
Lj5g0017580 Lotus japonicus HOM05D007613 ORTHO05D009344 4.4e-30 134.4 90 66.7
Sed0015913 Sechium edule HOM05D007613 ORTHO05D009344 4.4e-30 134.4 90 65.6
Manes.01G219200 Manihot esculenta HOM05D007613 ORTHO05D009344 5.8e-30 134.0 90 64.4
BcaB02g08092 Brassica carinata HOM05D007613 ORTHO05D009344 7.5e-30 133.7 92 62.0
Phvul.007G146700 Phaseolus vulgaris HOM05D007613 ORTHO05D009344 7.5e-30 133.7 92 64.1
QL12p028448 Quercus lobata HOM05D007613 ORTHO05D009344 2.2e-29 132.1 90 63.3
VMungo0720G1265 Vigna mungo HOM05D007613 ORTHO05D009344 2.9e-29 131.7 92 63.0
arahy.Tifrunner.gnm1.ann1.BW40YJ Arachis hypogaea HOM05D007613 ORTHO05D009344 4.9e-29 131.0 90 62.2
vmacro15014 Vaccinium macrocarpon HOM05D007613 ORTHO05D009344 4.9e-29 131.0 90 63.3
TWI59G0030 Tripterygium wilfordii HOM05D007613 ORTHO05D009344 6.4e-29 130.6 90 60.0
arahy.Tifrunner.gnm1.ann1.7MAL8N Arachis hypogaea HOM05D007613 ORTHO05D009344 8.3e-29 130.2 90 62.2
Gohir.D12G134100 Gossypium hirsutum HOM05D007613 ORTHO05D009344 8.3e-29 130.2 90 66.7
Gorai.008G145100 Gossypium raimondii HOM05D007613 ORTHO05D009344 8.3e-29 130.2 90 66.7
Haze_04939 Corylus avellana HOM05D007613 ORTHO05D009344 4.1e-28 127.9 105 57.1
Medtr1g088460 Medicago truncatula HOM05D007613 ORTHO05D009344 7.1e-28 127.1 92 63.0
Actinidia24821 Actinidia chinensis HOM05D007613 ORTHO05D009344 2.7e-27 125.2 90 62.2
Lsat_1_v5_gn_5_191040 Lactuca sativa HOM05D007613 ORTHO05D009344 2.7e-27 125.2 90 60.0
Atru.chr5.1146 Acer truncatum HOM05D007613 ORTHO05D009344 3.5e-27 124.8 90 62.2
ECA248G1192 Erigeron canadensis HOM05D007613 ORTHO05D009344 3.5e-27 124.8 90 60.0
HanXRQChr13g0413041 Helianthus annuus HOM05D007613 ORTHO05D009344 7.8e-27 123.6 87 60.9
TPR.G33996 Trifolium pratense HOM05D007613 ORTHO05D009344 7.8e-27 123.6 90 62.2
PGR119G2478 Punica granatum HOM05D007613 ORTHO05D009344 1.3e-26 122.9 90 58.9
Prupe.8G261600 Prunus persica HOM05D007613 ORTHO05D009344 2.3e-26 122.1 90 61.1
CSS0026666 Camellia sinensis var. sinensis HOM05D007613 ORTHO05D009344 3.0e-26 121.7 80 65.0
TAR636G2501 Trochodendron aralioides HOM05D007613 ORTHO05D009344 3.0e-26 121.7 88 59.1
GSVIVG01028017001 Vitis vinifera HOM05D007613 ORTHO05D009344 3.0e-26 121.7 88 62.5
Lalb_Chr06g0166471 Lupinus albus HOM05D007613 ORTHO05D009344 1.5e-25 119.4 86 58.1
Psat6g165400 Pisum sativum HOM05D007613 ORTHO05D009344 1.5e-25 119.4 92 58.7
MD03G1288400 Malus domestica HOM05D007613 ORTHO05D009344 1.9e-25 119.0 90 58.9
Nitab4.5_0002820g0060 Nicotiana tabacum HOM05D007613 ORTHO05D009344 1.9e-25 119.0 90 58.9
MSTRG.18147 Avicennia marina HOM05D007613 ORTHO05D009344 2.5e-25 118.6 90 56.7
DCAR_018332 Daucus carota HOM05D007613 ORTHO05D009344 3.3e-25 118.2 90 57.8
Nitab4.5_0019054g0010 Nicotiana tabacum HOM05D007613 ORTHO05D009344 3.3e-25 118.2 90 57.8
Lalb_Chr02g0146351 Lupinus albus HOM05D007613 ORTHO05D009344 4.3e-25 117.9 83 59.0
Cc01_g20860 Coffea canephora HOM05D007613 ORTHO05D009344 5.6e-25 117.5 88 61.4
Sopen06g035930 Solanum pennellii HOM05D007613 ORTHO05D009344 9.5e-25 116.7 90 55.6
Peaxi162Scf00140g01222 Petunia axillaris HOM05D007613 ORTHO05D009344 1.2e-24 116.3 90 56.7
Solyc06g084550.3 Solanum lycopersicum HOM05D007613 ORTHO05D009344 1.2e-24 116.3 90 54.4
Ca_10334_v3 Cicer arietinum L. HOM05D007613 ORTHO05D009344 4.7e-24 114.4 92 59.8
Oeu048336.2 Olea europaea HOM05D007613 ORTHO05D009344 1.1e-23 113.2 89 53.9
Nn3g21498 Nelumbo nucifera HOM05D007613 ORTHO05D009344 1.4e-23 112.8 88 52.3
CDE08G0198 Ceratophyllum demersum HOM05D007613 ORTHO05D009344 4.0e-23 111.3 86 57.0
Ah.08g213430 Amaranthus hybridus HOM05D000286 ORTHO05D000170 5.2e-23 110.9 85 55.3
CAN.G1209.25 Capsicum annuum HOM05D007613 ORTHO05D009344 5.2e-23 110.9 90 52.2
Migut.D00222 Erythranthe guttata HOM05D007613 ORTHO05D009344 2.6e-22 108.6 88 52.3
RcHm_v2.0_Chr6g0294031 Rosa chinensis HOM05D007613 ORTHO05D009344 3.4e-22 108.2 90 53.3
EL10Ac7g17473 Beta vulgaris HOM05D007613 ORTHO05D009344 7.6e-22 107.1 88 53.4
A04p00480 Brassica napus HOM05D007613 ORTHO05D009344 1.3e-21 106.3 68 63.2
Rhsim01G0285300 Rhododendron simsii HOM05D007613 ORTHO05D009344 2.9e-21 105.1 99 49.5
HanXRQChr13g0413071 Helianthus annuus HOM05D007613 ORTHO05D009344 3.7e-21 104.8 74 60.8
Hma1.2p1_0491F.1_g164570 Hydrangea macrophylla HOM05D007613 ORTHO05D009344 1.1e-20 103.2 91 54.9
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 7.1e-20 100.5 87 48.3
FvH4_2g25740 Fragaria vesca HOM05D007613 ORTHO05D009344 1.6e-19 99.4 89 51.7
FAN27G2766 Fragaria x ananassa HOM05D007613 ORTHO05D009344 2.7e-19 98.6 87 52.9
Aqoxy2G02939 Aquilegia oxysepala HOM05D007613 ORTHO05D009344 7.8e-19 97.1 81 48.1
FAN20G1450 Fragaria x ananassa HOM05D007613 ORTHO05D009344 2.3e-18 95.5 87 51.7
ClCG09G005860 Citrullus lanatus HOM05D007613 ORTHO05D009344 4.3e-17 91.3 62 66.1
Migut.B01150 Erythranthe guttata HOM05D007613 ORTHO05D009344 6.2e-16 87.4 69 50.7
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 5.8e-14 80.9 80 43.8
Sabra14G0095700 Salix brachista HOM05D007613 ORTHO05D009344 5.8e-14 80.9 52 69.2
Actinidia21047 Actinidia chinensis HOM05D007613 ORTHO05D009344 2.2e-13 79.0 55 61.8
SalBow3G3757 Salvia bowleyana HOM05D007613 ORTHO05D009344 3.2e-12 75.1 63 52.4
SHI15147 Sapria himalayana HOM05D007613 ORTHO05D009344 3.5e-11 71.6 63 52.4
BcaC02g10319 Brassica carinata HOM05D007613 ORTHO05D009344 4.6e-11 71.2 40 70.0
SMO347G0100 Selaginella moellendorffii HOM05D007613 ORTHO05D009344 3.9e-10 68.2 84 38.1
SGA_v2.0_scaffold1G00364 Striga asiatica HOM05D001636 ORTHO05D003817 3.9e-10 68.2 55 50.9
PGSC0003DMG400024046 Solanum tuberosum HOM05D007613 ORTHO05D009344 1.3e-08 63.2 113 31.9
Gohir.A12G130300 Gossypium hirsutum HOM05D007613 ORTHO05D009344 1.8e-07 59.3 42 59.5
unitig_0.g668 Utricularia gibba HOM05D007613 ORTHO05D009344 9.9e-06 53.5 42 59.5


User provided reference genes

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