Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 2.6e-50 201.8 107 100.0
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 1.2e-47 193.0 107 94.4
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 2.1e-47 192.2 104 95.2
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 5.1e-46 187.6 104 92.3
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 2.5e-45 185.3 106 90.6
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 4.3e-45 184.5 104 89.4
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 7.3e-45 183.7 102 93.1
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 9.5e-45 183.3 104 89.4
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 9.5e-45 183.3 101 90.1
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 9.5e-45 183.3 101 90.1
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 2.8e-44 181.8 101 89.1
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 2.8e-44 181.8 105 87.6
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 2.8e-44 181.8 103 89.3
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 2.8e-44 181.8 103 89.3
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 4.7e-44 181.0 102 89.2
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 8.1e-44 180.3 100 91.0
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 1.4e-43 179.5 100 90.0
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 1.4e-43 179.5 103 89.3
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 1.4e-43 179.5 102 88.2
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 1.4e-43 179.5 105 86.7
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 1.4e-43 179.5 100 92.0
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 1.8e-43 179.1 100 92.0
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 1.8e-43 179.1 102 88.2
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 1.8e-43 179.1 104 88.5
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 1.8e-43 179.1 101 91.1
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 1.8e-43 179.1 104 88.5
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 2.4e-43 178.7 104 87.5
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 2.4e-43 178.7 105 88.6
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 2.4e-43 178.7 105 84.8
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 2.4e-43 178.7 100 92.0
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 3.1e-43 178.3 101 89.1
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 3.1e-43 178.3 111 87.4
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 3.1e-43 178.3 102 89.2
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 6.8e-43 177.2 104 89.4
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 8.9e-43 176.8 100 90.0
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 2.6e-42 175.3 100 90.0
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 2.6e-42 175.3 100 90.0
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 2.6e-42 175.3 105 85.7
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 2.6e-42 175.3 106 84.9
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 2.6e-42 175.3 107 84.1
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.6e-42 175.3 107 84.1
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 2.6e-42 175.3 106 84.9
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 3.4e-42 174.9 102 87.3
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 4.4e-42 174.5 102 89.2
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 4.4e-42 174.5 106 84.9
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 5.8e-42 174.1 100 89.0
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 7.6e-42 173.7 106 84.9
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 7.6e-42 173.7 106 84.9
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 9.9e-42 173.3 106 82.1
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 9.9e-42 173.3 101 87.1
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 9.9e-42 173.3 106 84.0
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 9.9e-42 173.3 106 85.8
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 2.2e-41 172.2 106 84.9
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 2.2e-41 172.2 106 84.9
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 2.9e-41 171.8 97 89.7
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 3.8e-41 171.4 99 85.9
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 4.9e-41 171.0 102 86.3
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 8.4e-41 170.2 101 87.1
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 1.4e-40 169.5 99 86.9
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 3.2e-40 168.3 106 82.1
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 3.2e-40 168.3 102 84.3
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 3.2e-40 168.3 100 86.0
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 5.4e-40 167.5 113 78.8
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 5.4e-40 167.5 113 78.8
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 7.1e-40 167.2 104 80.8
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 2.1e-39 165.6 95 88.4
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 2.1e-39 165.6 105 80.0
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 2.1e-39 165.6 105 78.1
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 2.7e-39 165.2 111 80.2
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 3.5e-39 164.9 95 86.3
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 4.6e-39 164.5 95 87.4
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 4.6e-39 164.5 95 87.4
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 6.0e-39 164.1 95 87.4
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 6.0e-39 164.1 106 79.2
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 1.7e-38 162.5 106 80.2
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 3.0e-38 161.8 93 89.2
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 3.9e-38 161.4 96 86.5
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 3.9e-38 161.4 104 80.8
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 1.5e-37 159.5 98 81.6
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 1.9e-37 159.1 104 79.8
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 1.9e-37 159.1 104 79.8
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 1.9e-37 159.1 104 79.8
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 1.9e-37 159.1 104 79.8
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 1.9e-37 159.1 104 79.8
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 1.9e-37 159.1 104 76.0
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 2.5e-37 158.7 104 79.8
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 2.8e-36 155.2 104 78.8
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 2.8e-36 155.2 106 78.3
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 1.8e-35 152.5 100 75.0
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 2.4e-35 152.1 104 72.1
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 6.9e-35 150.6 88 87.5
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 1.5e-34 149.4 134 63.4
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 2.6e-34 148.7 96 84.4
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 3.4e-34 148.3 105 70.5
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 9.9e-34 146.7 106 77.4
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 1.7e-33 146.0 107 73.8
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 2.9e-33 145.2 101 77.2
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 8.4e-33 143.7 93 79.6
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 1.7e-30 136.0 79 86.1
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 1.6e-28 129.4 87 73.6
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 2.0e-26 122.5 71 91.5
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 2.0e-26 122.5 71 91.5
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 8.4e-25 117.1 141 52.5
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 2.4e-24 115.5 75 78.7
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 2.1e-23 112.5 103 58.3
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 1.3e-22 109.8 99 55.6
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.3e-22 109.8 61 88.5
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 1.9e-21 105.9 71 80.3
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 3.0e-14 82.0 48 85.4
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 2.5e-13 79.0 49 77.6
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 1.6e-12 76.3 90 40.0
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 5.3e-11 71.2 106 45.3
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 8.7e-06 53.9 26 96.2
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 8.7e-06 53.9 26 96.2


User provided reference genes

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