Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 6.8e-185 650.6 347 100.0
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 6.0e-149 531.2 348 85.6
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 1.5e-144 516.5 349 82.5
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 6.5e-143 511.1 349 79.9
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 2.1e-141 506.1 349 79.4
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 7.2e-134 481.1 333 80.2
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 3.5e-112 409.1 358 66.5
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 2.6e-107 392.9 352 62.8
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 1.7e-106 390.2 352 62.8
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 2.7e-104 382.9 325 65.5
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 7.7e-104 381.3 352 63.1
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 7.7e-104 381.3 352 63.1
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.9e-102 376.7 356 61.5
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 5.5e-102 375.2 351 62.1
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 2.3e-100 369.8 328 61.3
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 8.9e-100 367.9 353 60.9
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 3.4e-99 365.9 351 62.1
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 4.4e-99 365.5 356 61.5
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 1.3e-98 364.0 348 60.6
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 2.8e-98 362.8 357 59.7
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 1.4e-97 360.5 342 60.5
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 1.2e-96 357.5 327 63.0
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 2.3e-95 353.2 327 60.9
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 2.9e-95 352.8 332 61.4
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 5.0e-95 352.1 327 61.2
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 1.9e-94 350.1 328 60.1
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 5.6e-94 348.6 357 59.7
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 1.6e-93 347.1 356 59.3
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 3.1e-92 342.8 324 60.2
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 4.0e-92 342.4 351 59.5
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 1.2e-91 340.9 344 58.1
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 1.7e-90 337.0 333 59.5
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 2.2e-90 336.7 360 56.1
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 2.2e-90 336.7 345 55.1
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 4.1e-89 332.4 301 62.1
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 1.6e-88 330.5 328 58.8
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.6e-88 330.5 326 57.1
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 1.5e-86 323.9 355 53.2
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 4.3e-86 322.4 344 53.2
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 9.5e-86 321.2 364 53.0
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 2.1e-85 320.1 337 54.6
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 2.8e-85 319.7 337 52.5
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.1e-84 316.2 347 53.9
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 6.8e-84 315.1 347 53.3
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 1.2e-83 314.3 347 53.9
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 4.4e-83 312.4 347 53.9
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 4.9e-82 308.9 347 52.7
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 1.9e-81 307.0 347 53.0
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 5.4e-81 305.4 325 53.8
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 2.1e-80 303.5 347 51.6
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 2.1e-80 303.5 347 51.6
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 4.6e-80 302.4 349 54.4
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 7.8e-80 301.6 347 51.0
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 1.0e-79 301.2 347 51.6
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 1.3e-79 300.8 350 50.9
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 2.3e-79 300.1 350 50.9
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.6e-79 298.5 354 48.3
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 1.1e-78 297.7 347 50.7
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 1.9e-78 297.0 347 50.4
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 2.5e-78 296.6 347 51.0
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 4.3e-78 295.8 339 52.8
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 9.5e-78 294.7 343 52.5
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 2.8e-77 293.1 354 51.4
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 6.2e-77 292.0 354 51.1
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 8.1e-77 291.6 358 50.0
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.1e-76 291.2 314 51.9
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.3e-76 290.0 358 49.7
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 6.8e-76 288.5 341 51.0
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 4.4e-75 285.8 337 50.1
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 1.7e-74 283.9 287 53.7
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 2.2e-74 283.5 297 57.2
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 4.9e-74 282.3 341 49.9
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.9e-73 280.4 357 49.9
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 3.2e-73 279.6 358 48.6
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 5.4e-73 278.9 357 48.5
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.2e-72 277.7 357 49.6
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 1.2e-72 277.7 320 49.4
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 1.6e-72 277.3 317 50.5
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 3.5e-72 276.2 347 48.4
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 6.0e-72 275.4 387 45.0
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 1.0e-71 274.6 341 49.6
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 1.7e-71 273.9 332 49.4
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 7.3e-70 268.5 347 48.7
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 1.1e-68 264.6 268 55.2
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 4.0e-68 262.7 355 47.0
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 1.9e-65 253.8 261 56.3
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 2.1e-64 250.4 302 52.6
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 4.6e-64 249.2 218 62.4
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 8.7e-63 245.0 237 57.0
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 3.6e-61 239.6 351 43.0
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 4.4e-59 232.6 307 44.3
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 1.1e-57 228.0 351 41.9
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 4.2e-57 226.1 356 43.5
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 9.0e-52 208.4 325 39.7
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 1.0e-47 194.9 345 40.0
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 2.8e-45 186.8 223 53.8
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 2.2e-42 177.2 327 35.2
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 3.8e-42 176.4 346 34.7
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 2.5e-33 147.1 294 34.7
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 2.3e-23 114.0 123 45.5
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.1e-20 103.6 106 50.0
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 1.0e-18 98.6 218 32.6
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 1.1e-17 95.1 116 43.1
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 4.2e-17 93.2 116 42.2
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 9.1e-12 75.5 114 49.1
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.9e-09 67.8 109 42.2


User provided reference genes

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