Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_22901 Corchorus olitorius HOM05D003493 ORTHO05D003980 7.6e-136 487.3 263 100.0
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 8.5e-87 324.3 329 60.5
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 4.2e-86 322.0 329 59.6
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 4.2e-78 295.4 333 56.5
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 7.7e-72 274.6 328 53.0
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 7.7e-72 274.6 328 53.0
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 7.2e-70 268.1 329 52.6
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.1e-69 266.5 328 51.5
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 3.0e-55 219.5 338 46.2
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 2.8e-53 213.0 336 43.8
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 8.0e-53 211.5 340 44.4
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 1.8e-52 210.3 345 44.9
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 5.8e-51 205.3 339 45.1
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 9.8e-51 204.5 338 43.8
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 2.7e-48 196.4 340 42.6
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 2.1e-45 186.8 336 40.8
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 1.2e-43 181.0 358 38.8
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 1.2e-43 181.0 339 39.5
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 1.3e-42 177.6 369 39.8
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 6.4e-42 175.3 340 41.2
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 1.9e-41 173.7 335 42.1
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 3.2e-41 172.9 321 41.4
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 1.6e-40 170.6 351 41.3
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 2.1e-40 170.2 343 41.7
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 2.1e-40 170.2 348 39.9
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 3.5e-40 169.5 344 40.1
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 4.6e-40 169.1 344 40.1
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.0e-39 167.9 323 39.9
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 1.3e-39 167.5 338 39.6
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.3e-39 166.8 337 38.0
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 3.0e-39 166.4 342 40.6
Cpa.g.sc829.1 Carica papaya HOM05D003493 ORTHO05D003980 3.9e-39 166.0 213 47.9
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 8.6e-39 164.9 323 39.0
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 8.6e-39 164.9 323 39.0
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.5e-38 164.1 344 39.2
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.9e-38 163.7 344 39.8
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 1.9e-38 163.7 336 37.5
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 9.5e-38 161.4 341 40.2
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 2.1e-37 160.2 357 37.0
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 1.8e-36 157.1 339 36.3
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 4.0e-36 156.0 351 37.6
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 5.2e-36 155.6 355 38.0
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 7.6e-35 151.8 347 38.3
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 9.9e-35 151.4 349 40.1
CiPaw.15G108800 Carya illinoinensis HOM05D003493 ORTHO05D003980 9.9e-35 151.4 205 48.3
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 2.2e-34 150.2 346 38.4
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 4.9e-34 149.1 341 37.2
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.1e-33 147.9 211 46.4
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 2.4e-33 146.7 354 36.2
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 1.6e-32 144.1 382 34.8
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 6.0e-32 142.1 337 38.3
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 7.8e-32 141.7 357 35.9
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 7.8e-32 141.7 374 34.5
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 1.3e-31 141.0 347 34.9
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 2.3e-31 140.2 223 45.3
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 3.0e-31 139.8 334 35.0
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 3.0e-31 139.8 334 37.4
QL10p036801 Quercus lobata HOM05D003493 ORTHO05D003980 3.9e-31 139.4 204 42.6
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 6.6e-31 138.7 377 34.0
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 8.7e-31 138.3 359 35.9
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 1.1e-30 137.9 360 33.6
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 5.6e-30 135.6 357 34.5
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 5.6e-30 135.6 380 33.7
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 5.6e-30 135.6 376 33.8
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 7.3e-30 135.2 206 44.2
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 9.6e-30 134.8 341 34.9
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 9.6e-30 134.8 360 34.4
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 9.6e-30 134.8 331 37.8
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.2e-29 134.4 341 35.2
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 1.2e-29 134.4 360 34.2
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 1.6e-29 134.0 326 35.0
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 2.8e-29 133.3 354 33.3
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 3.6e-29 132.9 342 34.8
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 3.6e-29 132.9 334 34.7
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 6.2e-29 132.1 342 34.8
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 6.2e-29 132.1 213 43.7
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 6.2e-29 132.1 362 33.7
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 8.1e-29 131.7 357 33.9
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 8.1e-29 131.7 357 33.9
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 1.1e-28 131.3 329 34.0
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 1.1e-28 131.3 370 33.8
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 1.1e-28 131.3 355 35.2
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 1.1e-28 131.3 375 34.1
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 1.8e-28 130.6 362 32.3
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 1.8e-28 130.6 368 32.9
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 3.1e-28 129.8 369 34.7
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 4.0e-28 129.4 343 32.9
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 4.0e-28 129.4 366 34.2
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 4.0e-28 129.4 375 33.9
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 6.9e-28 128.6 339 34.2
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 6.9e-28 128.6 348 33.3
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 9.0e-28 128.3 339 33.9
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 9.0e-28 128.3 231 41.6
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 1.5e-27 127.5 355 33.5
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 2.0e-27 127.1 337 34.7
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 2.0e-27 127.1 363 32.8
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 2.6e-27 126.7 333 32.4
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 2.6e-27 126.7 340 32.4
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 3.4e-27 126.3 337 35.6
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 7.6e-27 125.2 370 33.5
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 1.3e-26 124.4 294 34.4
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 1.3e-26 124.4 315 32.4
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 1.7e-26 124.0 348 33.9
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 2.2e-26 123.6 312 34.6
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 2.2e-26 123.6 350 34.9
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 8.4e-26 121.7 338 34.3
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 8.4e-26 121.7 341 35.2
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 2.4e-25 120.2 331 34.7
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 3.2e-25 119.8 358 33.0
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 5.4e-25 119.0 292 34.2
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 9.3e-25 118.2 363 32.5
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 9.3e-25 118.2 358 32.7
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 2.1e-24 117.1 408 29.9
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 3.5e-24 116.3 336 33.9
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 4.6e-24 115.9 331 31.4
QL10p035447 Quercus lobata HOM05D003493 ORTHO05D003980 4.6e-24 115.9 187 40.6
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 7.8e-24 115.2 350 31.7
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 1.0e-23 114.8 267 36.7
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 1.3e-23 114.4 344 33.1
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 1.3e-23 114.4 342 32.5
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 1.7e-23 114.0 370 31.1
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 3.9e-23 112.8 196 41.3
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 1.6e-21 107.5 334 32.0
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 1.6e-21 107.5 316 33.5
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 2.1e-21 107.1 369 30.4
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 2.8e-21 106.7 329 33.4
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 3.1e-20 103.2 333 32.1
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 2.0e-19 100.5 376 31.1
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 5.8e-19 99.0 348 31.0
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 9.9e-19 98.2 344 32.0
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 1.3e-18 97.8 376 28.7
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 2.2e-18 97.1 345 29.3
Ca_25290_v3 Cicer arietinum L. HOM05D003493 ORTHO05D015411 4.9e-18 95.9 99 53.5
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 4.9e-18 95.9 392 29.8
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 1.2e-16 91.3 234 32.9
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.6e-16 90.9 286 33.2
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 3.5e-16 89.7 352 29.0
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 6.0e-16 89.0 268 34.0
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 6.0e-16 89.0 355 29.0
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 2.3e-15 87.0 169 36.7
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 3.0e-15 86.7 330 28.5
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 6.7e-15 85.5 195 31.8
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 1.1e-14 84.7 278 30.2
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 1.1e-14 84.7 332 27.1
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 2.8e-13 80.1 325 29.5
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 2.8e-13 80.1 337 27.9
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 5.3e-12 75.9 383 25.3
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 2.0e-11 73.9 327 28.4
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 3.4e-11 73.2 222 32.9
BcaC07g41355 Brassica carinata HOM05D003493 ORTHO05D003980 5.5e-09 65.9 148 42.6
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 1.0e-07 61.6 304 28.9


User provided reference genes

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