Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_22900 Corchorus olitorius HOM05D003493 ORTHO05D003980 1.6e-118 429.5 221 100.0
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 2.9e-72 275.8 206 69.9
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 6.5e-72 274.6 206 73.3
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 1.1e-71 273.9 208 71.2
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 3.2e-71 272.3 207 71.0
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 4.2e-71 271.9 207 71.0
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.7e-70 269.2 207 70.5
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.0e-60 236.5 209 62.7
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 2.0e-60 236.5 209 62.7
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.6e-60 236.1 209 62.7
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 2.9e-56 222.6 233 56.7
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 3.8e-56 222.2 218 55.0
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 1.1e-55 220.7 207 57.0
CiPaw.15G108700 Carya illinoinensis HOM05D003493 ORTHO05D003980 3.2e-55 219.2 218 56.4
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 3.2e-55 219.2 217 54.8
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 9.4e-55 217.6 205 54.1
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 1.6e-54 216.9 212 58.0
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 8.0e-54 214.5 214 56.5
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 2.3e-53 213.0 214 56.1
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 3.0e-53 212.6 218 52.8
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 6.8e-53 211.5 213 56.8
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 2.6e-52 209.5 218 54.6
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 2.6e-52 209.5 215 53.5
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 3.4e-52 209.1 213 54.0
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 4.4e-52 208.8 219 54.3
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 4.4e-52 208.8 211 53.6
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 1.3e-51 207.2 211 53.1
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 1.3e-51 207.2 220 54.1
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 1.7e-51 206.8 215 54.4
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 3.7e-51 205.7 206 55.8
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 3.7e-51 205.7 211 52.1
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 3.7e-51 205.7 206 55.8
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 3.7e-51 205.7 212 54.7
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 3.7e-51 205.7 214 52.3
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 3.7e-51 205.7 214 51.9
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 4.8e-51 205.3 230 50.4
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 4.8e-51 205.3 214 55.1
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 6.3e-51 204.9 215 54.4
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 6.3e-51 204.9 209 56.0
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 6.3e-51 204.9 214 56.5
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 8.3e-51 204.5 211 51.7
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 1.1e-50 204.1 206 55.3
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 1.1e-50 204.1 206 54.9
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 1.4e-50 203.8 227 51.5
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 1.8e-50 203.4 210 53.3
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 1.8e-50 203.4 210 48.6
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 7.0e-50 201.4 215 50.7
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 9.1e-50 201.1 209 54.5
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 2.0e-49 199.9 208 51.4
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 3.5e-49 199.1 219 52.1
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 3.5e-49 199.1 204 52.5
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 4.5e-49 198.7 218 51.4
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 4.5e-49 198.7 214 51.4
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 4.5e-49 198.7 215 51.2
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 5.9e-49 198.4 215 52.1
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 5.9e-49 198.4 215 52.6
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 7.7e-49 198.0 219 52.5
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 1.0e-48 197.6 233 48.1
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 1.0e-48 197.6 207 51.7
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 1.0e-48 197.6 215 52.6
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 1.3e-48 197.2 214 50.5
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 1.3e-48 197.2 207 51.2
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 1.7e-48 196.8 207 51.7
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 2.2e-48 196.4 215 51.2
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 2.9e-48 196.1 217 52.5
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 3.8e-48 195.7 210 55.2
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 8.5e-48 194.5 217 54.4
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 8.5e-48 194.5 221 50.7
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 1.1e-47 194.1 208 51.9
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 2.5e-47 193.0 217 52.5
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 2.5e-47 193.0 216 49.5
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 3.2e-47 192.6 218 51.8
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 4.2e-47 192.2 216 50.5
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 4.2e-47 192.2 217 53.9
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 4.2e-47 192.2 207 52.2
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 7.2e-47 191.4 223 53.4
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 7.2e-47 191.4 216 51.9
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 1.2e-46 190.7 216 49.5
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 1.2e-46 190.7 215 51.2
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 1.6e-46 190.3 215 49.3
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 4.7e-46 188.7 213 49.3
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 8.0e-46 188.0 214 49.5
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 1.4e-45 187.2 212 48.6
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 1.8e-45 186.8 222 52.7
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.8e-45 186.8 222 52.7
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 1.8e-45 186.8 214 49.5
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 2.3e-45 186.4 218 49.5
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 4.0e-45 185.7 214 49.1
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 4.0e-45 185.7 214 49.1
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 5.2e-45 185.3 214 50.9
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 5.2e-45 185.3 215 52.6
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 6.8e-45 184.9 216 49.5
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 1.2e-44 184.1 222 47.3
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 2.0e-44 183.3 213 49.3
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 2.6e-44 183.0 214 48.1
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 4.4e-44 182.2 214 48.6
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 4.4e-44 182.2 214 48.1
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 4.4e-44 182.2 218 47.7
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 5.7e-44 181.8 215 48.4
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 7.5e-44 181.4 217 49.3
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 9.8e-44 181.0 217 50.2
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 9.8e-44 181.0 207 48.8
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 1.3e-43 180.6 209 49.8
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 1.3e-43 180.6 217 47.9
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.7e-43 180.3 213 47.9
vmacro17772 Vaccinium macrocarpon HOM05D003493 ORTHO05D003980 2.8e-43 179.5 150 65.3
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 6.3e-43 178.3 227 45.4
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 6.3e-43 178.3 234 46.6
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 1.1e-42 177.6 213 50.7
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 1.1e-42 177.6 214 50.0
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 1.1e-42 177.6 214 50.0
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 2.4e-42 176.4 214 50.0
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 2.4e-42 176.4 214 50.0
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 4.1e-42 175.6 213 44.6
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 5.4e-42 175.3 214 50.0
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 7.0e-42 174.9 212 46.7
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 7.0e-42 174.9 217 46.5
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 9.2e-42 174.5 213 45.1
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 5.9e-41 171.8 215 46.5
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 2.3e-40 169.9 169 53.3
Oeu034417.1 Olea europaea HOM05D003493 ORTHO05D003980 2.9e-40 169.5 150 60.7
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 8.6e-40 167.9 212 49.1
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 3.3e-39 166.0 122 65.6
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 3.3e-39 166.0 215 47.0
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 5.6e-39 165.2 217 47.9
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 9.5e-39 164.5 206 48.5
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 2.1e-38 163.3 145 57.2
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 4.7e-38 162.2 205 46.8
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 8.0e-38 161.4 156 55.8
DCAR_011394 Daucus carota HOM05D003493 ORTHO05D003980 3.0e-37 159.5 217 43.8
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 4.0e-37 159.1 155 55.5
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 2.0e-36 156.8 237 41.4
arahy.Tifrunner.gnm1.ann1.28MV8S Arachis hypogaea HOM05D003493 ORTHO05D003980 4.4e-36 155.6 147 55.8
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 4.4e-36 155.6 237 40.9
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 5.4e-34 148.7 206 42.2
arahy.Tifrunner.gnm1.ann1.I3UW9X Arachis hypogaea HOM05D003493 ORTHO05D003980 1.2e-33 147.5 200 44.0
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 1.6e-33 147.1 125 59.2
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 2.3e-32 143.3 242 38.4
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 5.0e-32 142.1 112 59.8
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 2.1e-30 136.7 205 38.5
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 6.2e-30 135.2 206 38.8
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 6.8e-29 131.7 87 66.7
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 1.2e-28 131.0 210 41.0
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 4.4e-28 129.0 87 66.7
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 4.1e-26 122.5 283 31.8
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 4.6e-25 119.0 211 40.3
arahy.Tifrunner.gnm1.ann1.LRB6U9 Arachis hypogaea HOM05D003493 ORTHO05D003980 3.9e-24 115.9 137 49.6
SEGI_25111 Sequoiadendron giganteum HOM05D003493 ORTHO05D003980 1.4e-21 107.5 142 41.5
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 6.8e-21 105.1 217 33.2
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 3.4e-20 102.8 72 65.3
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 4.9e-19 99.0 236 31.4
arahy.Tifrunner.gnm1.ann1.XZC4F6 Arachis hypogaea HOM05D003493 ORTHO05D003980 1.9e-18 97.1 81 54.3
AUR62040636 Chenopodium quinoa HOM05D003493 ORTHO05D003980 9.2e-18 94.7 141 43.3
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 4.3e-15 85.9 232 30.2
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 8.1e-14 81.6 143 36.4
Ah.14g085840 Amaranthus hybridus HOM05D005380 ORTHO05D006601 4.0e-13 79.3 122 42.6
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 8.9e-13 78.2 222 28.4
arahy.Tifrunner.gnm1.ann1.3LZL4F Arachis hypogaea HOM05D003493 ORTHO05D003980 2.0e-12 77.0 152 36.8
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.2e-11 73.6 122 31.1
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 8.4e-11 71.6 222 24.3
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 9.2e-10 68.2 35 82.9
arahy.Tifrunner.gnm1.ann1.HH6FHR Arachis hypogaea HOM05D003493 ORTHO05D003980 4.6e-09 65.9 80 48.8
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 1.3e-08 64.3 46 65.2
BcaNung06733 Brassica carinata HOM05D003493 ORTHO05D003980 8.6e-08 61.6 93 45.2
Lj9C232G5 Lonicera japonica HOM05D003493 ORTHO05D003980 2.1e-06 57.0 43 69.8


User provided reference genes

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